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8tk8

From Proteopedia

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Current revision (12:08, 8 November 2023) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 8tk8 is ON HOLD
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==Human Type 3 IP3 Receptor - Resting State (+IP3/ATP)==
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<StructureSection load='8tk8' size='340' side='right'caption='[[8tk8]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[8tk8]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8TK8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8TK8 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=I3P:D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE'>I3P</scene>, <scene name='pdbligand=PCW:1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE'>PCW</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8tk8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8tk8 OCA], [https://pdbe.org/8tk8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8tk8 RCSB], [https://www.ebi.ac.uk/pdbsum/8tk8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8tk8 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/ITPR3_HUMAN ITPR3_HUMAN] Receptor for inositol 1,4,5-trisphosphate, a second messenger that mediates the release of intracellular calcium.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Inositol 1,4,5-trisphosphate receptors (IP(3)Rs) are endoplasmic reticulum Ca(2+) channels whose biphasic dependence on cytosolic Ca(2+) gives rise to Ca(2+) oscillations that regulate fertilization, cell division and cell death. Despite the critical roles of IP(3)R-mediated Ca(2+) responses, the structural underpinnings of the biphasic Ca(2+) dependence that underlies Ca(2+) oscillations are incompletely understood. Here, we collect cryo-EM images of an IP(3)R with Ca(2+) concentrations spanning five orders of magnitude. Unbiased image analysis reveals that Ca(2+) binding does not explicitly induce conformational changes but rather biases a complex conformational landscape consisting of resting, preactivated, activated, and inhibited states. Using particle counts as a proxy for relative conformational free energy, we demonstrate that Ca(2+) binding at a high-affinity site allows IP(3)Rs to activate by escaping a low-energy resting state through an ensemble of preactivated states. At high Ca(2+) concentrations, IP(3)Rs preferentially enter an inhibited state stabilized by a second, low-affinity Ca(2+) binding site. Together, these studies provide a mechanistic basis for the biphasic Ca(2+)-dependence of IP(3)R channel activity.
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Authors: Paknejad, N., Sapuru, V., Hite, R.K.
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Structural titration reveals Ca(2+)-dependent conformational landscape of the IP(3) receptor.,Paknejad N, Sapuru V, Hite RK Nat Commun. 2023 Oct 28;14(1):6897. doi: 10.1038/s41467-023-42707-3. PMID:37898605<ref>PMID:37898605</ref>
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Description: Human Type 3 IP3 Receptor -Resting State (+IP3/ATP)
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Paknejad, N]]
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<div class="pdbe-citations 8tk8" style="background-color:#fffaf0;"></div>
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[[Category: Hite, R.K]]
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== References ==
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[[Category: Sapuru, V]]
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Homo sapiens]]
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[[Category: Large Structures]]
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[[Category: Hite RK]]
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[[Category: Paknejad N]]
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[[Category: Sapuru V]]

Current revision

Human Type 3 IP3 Receptor - Resting State (+IP3/ATP)

PDB ID 8tk8

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