8be3

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Current revision (08:22, 14 August 2024) (edit) (undo)
 
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<table><tr><td colspan='2'>[[8be3]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8BE3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8BE3 FirstGlance]. <br>
<table><tr><td colspan='2'>[[8be3]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8BE3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8BE3 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
 
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8be3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8be3 OCA], [https://pdbe.org/8be3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8be3 RCSB], [https://www.ebi.ac.uk/pdbsum/8be3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8be3 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8be3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8be3 OCA], [https://pdbe.org/8be3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8be3 RCSB], [https://www.ebi.ac.uk/pdbsum/8be3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8be3 ProSAT]</span></td></tr>
</table>
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== Function ==
== Function ==
[https://www.uniprot.org/uniprot/RASK_HUMAN RASK_HUMAN] Ras proteins bind GDP/GTP and possess intrinsic GTPase activity.
[https://www.uniprot.org/uniprot/RASK_HUMAN RASK_HUMAN] Ras proteins bind GDP/GTP and possess intrinsic GTPase activity.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Protein-protein interactions (PPIs) are central in cell metabolism but research tools for the structural and functional characterization of these PPIs are often missing. Here we introduce broadly applicable immunization (Cross-link PPIs and immunize llamas, ChILL) and selection strategies (Display and co-selection, DisCO) for the discovery of diverse nanobodies that either stabilize or disrupt PPIs in a single experiment. We apply ChILL and DisCO to identify competitive, connective, or fully allosteric nanobodies that inhibit or facilitate the formation of the SOS1*RAS complex and modulate the nucleotide exchange rate on this pivotal GTPase in vitro as well as RAS signalling in cellulo. One of these connective nanobodies fills a cavity that was previously identified as the binding pocket for a series of therapeutic lead compounds. The long complementarity-determining region (CDR3) that penetrates this binding pocket serves as pharmacophore for extending the repertoire of potential leads.
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Allosteric nanobodies to study the interactions between SOS1 and RAS.,Fischer B, Uchanski T, Sheryazdanova A, Gonzalez S, Volkov AN, Brosens E, Zogg T, Kalichuk V, Ballet S, Versees W, Sablina AA, Pardon E, Wohlkonig A, Steyaert J Nat Commun. 2024 Jul 23;15(1):6214. doi: 10.1038/s41467-024-50349-2. PMID:39043660<ref>PMID:39043660</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 8be3" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>

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Crystal structure of KRasG12V-Nanobody84

PDB ID 8be3

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