8j4j

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'''Unreleased structure'''
 
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The entry 8j4j is ON HOLD until Paper Publication
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==X-ray structure of a ferric ion-binding protein A (FbpA) from Vibrio metschnikovii in complex with ferric ion==
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<StructureSection load='8j4j' size='340' side='right'caption='[[8j4j]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[8j4j]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_metschnikovii Vibrio metschnikovii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8J4J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8J4J FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO3:CARBONATE+ION'>CO3</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8j4j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8j4j OCA], [https://pdbe.org/8j4j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8j4j RCSB], [https://www.ebi.ac.uk/pdbsum/8j4j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8j4j ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/C9P1D3_VIBME C9P1D3_VIBME]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Global warming has increased the growth of pathogenic Vibrio bacteria, which can cause foodborne illnesses and death. Vibrio bacteria require iron for growth and survival. They utilize a ferric ion-binding protein (FbpA) to bind and transport Fe(3+) into the cell. FbpA from V. metschnikovii (Vm) is a potential target for inhibiting its growth. Rosmarinic acid (RA) can block the binding of VmFbpA to Fe(3+) ; however, the molecular mechanism of Fe(3+) binding and RA inhibition to VmFbpA is unclear. In this study, we used X-ray crystallography to determine the Fe(3+) binding mode of VmFbpA and the mechanism of RA inhibition. The structures revealed that in the Fe(3+) bound form, Fe(3+) was coordinated to VmFbpA by two Tyr residues, two HCO(3) (-) ions, and two water molecules in a six-coordinated geometry. In contrast, in the inhibitor bound form, RA was initially bound to VmFbpA following gel filtration purification, but it was hydrolyzed to danshensu (DSS), which occupied the binding site as shown in an electron density map and reverse phase chromatography (RPC) analysis. Both RA and DSS exhibited a stronger binding affinity to VmFbpA, higher Fe(3+) reduction capacity, and more potent bacteriostatic effect on V. metschnikovii compared with caffeic acid (CA), another hydrolysis product of RA. These results provide insight into the mechanism of iron acquisition by V. metschnikovii and inhibition by RA and DSS. Our findings offer clues on the development of effective strategies to prevent Vibrio infections. This article is protected by copyright. All rights reserved.
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Authors:
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Molecular Mechanism of Fe(3+) Binding Inhibition to Vibrio metschnikovii Ferric Ion-Binding Protein, FbpA, by Rosmarinic Acid and its Hydrolysate, Danshensu.,Lu P, Jiang J, Liu C, Okuda S, Itoh H, Okamoto K, Suzuki M, Nagata K Protein Sci. 2023 Dec 25:e4881. doi: 10.1002/pro.4881. PMID:38143427<ref>PMID:38143427</ref>
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Description:
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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<div class="pdbe-citations 8j4j" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Vibrio metschnikovii]]
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[[Category: Jiang J]]
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[[Category: Lu P]]
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[[Category: Nagata K]]

Revision as of 10:24, 10 January 2024

X-ray structure of a ferric ion-binding protein A (FbpA) from Vibrio metschnikovii in complex with ferric ion

PDB ID 8j4j

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