6la0

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Current revision (08:06, 17 October 2024) (edit) (undo)
 
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<StructureSection load='6la0' size='340' side='right'caption='[[6la0]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
<StructureSection load='6la0' size='340' side='right'caption='[[6la0]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6la0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_oryzae Aspergillus oryzae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LA0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6LA0 FirstGlance]. <br>
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LA0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6LA0 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6la0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6la0 OCA], [https://pdbe.org/6la0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6la0 RCSB], [https://www.ebi.ac.uk/pdbsum/6la0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6la0 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6la0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6la0 OCA], [https://pdbe.org/6la0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6la0 RCSB], [https://www.ebi.ac.uk/pdbsum/6la0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6la0 ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
 
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[https://www.uniprot.org/uniprot/A0A1S9DRB1_ASPOZ A0A1S9DRB1_ASPOZ]
 
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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The rutinosidase (Rut)-encoding gene Aorut has been expressed in Pichia pastoris with its native signal sequence from Aspergillus oryzae Biochemical and structural investigation of the purified recombinant mature A. oryzae Rut (AoRut), designated rAoRutM, was performed in this study. A 1.7-A resolution crystal structure of rAoRutM was determined, which is an essential step forward in the utilization of AoRut as a potential catalyst. The crystal structure of rAoRutM was represented by a (beta/alpha)8 TIM barrel fold with structural similarity to that of rutinosidase from Aspergillus niger (AnRut) and an exo-beta-(1,3)-glucanase from Candida albicans The crystal structure revealed that the catalytic site was located in a deep cleft, similarly to AnRut, and that internal cavities and water molecules were also present. Purified rAoRutM hydrolyzed not only 7-O-linked and 3-O-linked flavonoid rutinosides but also 7-O-linked and 3-O-linked flavonoid glucosides. rAoRutM displayed high catalytic activity toward quercetin 3-O-linked substrates such as rutin and isoquercitrin, rather than to the 7-O-linked substrate, quercetin-7-O-glucoside. Unexpectedly, purified rAoRutM exhibited increased thermostability after treatment with endo-beta-N-acetylglucosaminidase H. Circular dichroism (CD) spectra of purified intact rAoRutM and of the enzyme after N-deglycosylation showed a typical alpha-helical CD profile; however, the molar ellipticity values of the peaks at 208 nm and 212 nm differed. The Km and k cat values for the substrates modified by rutinose were higher than those for the substrates modified by beta-d-glucose.IMPORTANCE Flavonoid glycosides constitute a class of secondary metabolites widely distributed in nature. These compounds are involved in bitter taste or clouding in plant-based foods or beverages, respectively. Flavonoid glycoside degradation can proceed through two alternative enzymatic pathways: one that is mediated by monoglycosidases and another that is catalyzed by a diglycosidase. The present report on the biochemical and structural investigation of A. oryzae rutinosidase provides a potential biocatalyst for industrial applications of flavonoids.
 
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Aspergillus oryzae Rutinosidase: Biochemical and Structural Investigation.,Makabe K, Hirota R, Shiono Y, Tanaka Y, Koseki T Appl Environ Microbiol. 2021 Jan 15;87(3). pii: AEM.02438-20. doi:, 10.1128/AEM.02438-20. Print 2021 Jan 15. PMID:33218993<ref>PMID:33218993</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 6la0" style="background-color:#fffaf0;"></div>
 
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Aspergillus oryzae]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Koseki T]]
[[Category: Koseki T]]
[[Category: Makabe K]]
[[Category: Makabe K]]

Current revision

Crystal structure of AoRut

PDB ID 6la0

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