This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2mqt

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:01, 1 May 2024) (edit) (undo)
 
Line 7: Line 7:
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2mqt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mqt OCA], [https://pdbe.org/2mqt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2mqt RCSB], [https://www.ebi.ac.uk/pdbsum/2mqt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2mqt ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2mqt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mqt OCA], [https://pdbe.org/2mqt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2mqt RCSB], [https://www.ebi.ac.uk/pdbsum/2mqt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2mqt ProSAT]</span></td></tr>
</table>
</table>
-
<div style="background-color:#fffaf0;">
 
-
== Publication Abstract from PubMed ==
 
-
To prime reverse transcription, retroviruses require annealing of a transfer RNA molecule to the U5 primer binding site (U5-PBS) region of the viral genome. The residues essential for primer annealing are initially locked in intramolecular interactions; hence, annealing requires the chaperone activity of the retroviral nucleocapsid (NC) protein to facilitate structural rearrangements. Here we show that, unlike classical chaperones, the Moloney murine leukaemia virus NC uses a unique mechanism for remodelling: it specifically targets multiple structured regions in both the U5-PBS and tRNAPro primer that otherwise sequester residues necessary for annealing. This high-specificity and high-affinity binding by NC consequently liberates these sequestered residues-which are exactly complementary-for intermolecular interactions. Furthermore, NC utilizes a step-wise, entropy-driven mechanism to trigger both residue-specific destabilization and residue-specific release. Our structures of NC bound to U5-PBS and tRNAPro reveal the structure-based mechanism for retroviral primer annealing and provide insights as to how ATP-independent chaperones can target specific RNAs amidst the cellular milieu of non-target RNAs.
 
- 
-
A structure-based mechanism for tRNA and retroviral RNA remodelling during primer annealing.,Miller SB, Yildiz FZ, Lo JA, Wang B, D'Souza VM Nature. 2014 Sep 7. doi: 10.1038/nature13709. PMID:25209668<ref>PMID:25209668</ref>
 
- 
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
-
</div>
 
-
<div class="pdbe-citations 2mqt" style="background-color:#fffaf0;"></div>
 
-
== References ==
 
-
<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>

Current revision

Solution NMR structure of the U5-primer binding site (U5-PBS) domain of murine leukemia virus RNA genome

PDB ID 2mqt

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools