2ood

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:44, 9 October 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='2ood' size='340' side='right'caption='[[2ood]], [[Resolution|resolution]] 2.62&Aring;' scene=''>
<StructureSection load='2ood' size='340' side='right'caption='[[2ood]], [[Resolution|resolution]] 2.62&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2ood]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bradyrhizobium_diazoefficiens_USDA_110 Bradyrhizobium diazoefficiens USDA 110]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OOD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OOD FirstGlance]. <br>
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OOD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OOD FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.62&#8491;</td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.62&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GUN:GUANINE'>GUN</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GUN:GUANINE'>GUN</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ood FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ood OCA], [https://pdbe.org/2ood PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ood RCSB], [https://www.ebi.ac.uk/pdbsum/2ood PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ood ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2ood TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ood FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ood OCA], [https://pdbe.org/2ood PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ood RCSB], [https://www.ebi.ac.uk/pdbsum/2ood PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ood ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2ood TOPSAN]</span></td></tr>
</table>
</table>
-
== Function ==
 
-
[https://www.uniprot.org/uniprot/Q89NG0_BRADU Q89NG0_BRADU]
 
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 15: Line 13:
<jmolCheckbox>
<jmolCheckbox>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oo/2ood_consurf.spt"</scriptWhenChecked>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oo/2ood_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
Line 25: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bradyrhizobium diazoefficiens USDA 110]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Agarwal R]]
[[Category: Agarwal R]]
[[Category: Burley SK]]
[[Category: Burley SK]]
[[Category: Swaminathan S]]
[[Category: Swaminathan S]]

Current revision

Crystal structure of guanine deaminase from Bradyrhizobium japonicum

PDB ID 2ood

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools