8ga1

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:11, 23 October 2024) (edit) (undo)
 
Line 1: Line 1:
==CLC-ec1 R230C/L249C/C85A at pH 4.5 100mM Cl Swap==
==CLC-ec1 R230C/L249C/C85A at pH 4.5 100mM Cl Swap==
-
<StructureSection load='8ga1' size='340' side='right'caption='[[8ga1]]' scene=''>
+
<StructureSection load='8ga1' size='340' side='right'caption='[[8ga1]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8GA1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8GA1 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[8ga1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8GA1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8GA1 FirstGlance]. <br>
-
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8ga1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8ga1 OCA], [https://pdbe.org/8ga1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8ga1 RCSB], [https://www.ebi.ac.uk/pdbsum/8ga1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8ga1 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8ga1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8ga1 OCA], [https://pdbe.org/8ga1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8ga1 RCSB], [https://www.ebi.ac.uk/pdbsum/8ga1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8ga1 ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CLCA_ECOLI CLCA_ECOLI] Proton-coupled chloride transporter. Functions as antiport system and exchanges two chloride ions for 1 proton. Probably acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation, as part of the extreme acid resistance (XAR) response.<ref>PMID:12384697</ref> <ref>PMID:14985752</ref> <ref>PMID:16341087</ref> <ref>PMID:16905147</ref> <ref>PMID:18678918</ref>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
CLCs are dimeric chloride channels and anion/proton exchangers that regulate processes such as muscle contraction and endo-lysosome acidification. Common gating controls their activity; its closure simultaneously silences both protomers, and its opening allows them to independently transport ions. Mutations affecting common gating in human CLCs cause dominant genetic disorders. The structural rearrangements underlying common gating are unknown. Here, using single-particle cryo-electron microscopy, we show that the prototypical Escherichia coli CLC-ec1 undergoes large-scale rearrangements in activating conditions. The slow, pH-dependent remodeling of the dimer interface leads to the concerted opening of the intracellular H(+) pathways and is required for transport. The more frequent formation of short water wires in the open H(+) pathway enables Cl(-) pore openings. Mutations at disease-causing sites favor CLC-ec1 activation and accelerate common gate opening in the human CLC-7 exchanger. We suggest that the pH activation mechanism of CLC-ec1 is related to the common gating of CLC-7.
 +
 +
Structural basis of pH-dependent activation in a CLC transporter.,Fortea E, Lee S, Chadda R, Argyros Y, Sandal P, Mahoney-Kruszka R, Ciftci HD, Falzone ME, Huysmans G, Robertson JL, Boudker O, Accardi A Nat Struct Mol Biol. 2024 Apr;31(4):644-656. doi: 10.1038/s41594-023-01210-5. , Epub 2024 Jan 26. PMID:38279055<ref>PMID:38279055</ref>
 +
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 8ga1" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Escherichia coli]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Fortea, E, Lee, S, Argyos, Y, Chadda, R, Ciftci, D, Huysmans, G, Robertson, JL, Boudker, O, Accardi, A]]
+
[[Category: Accardi A]]
 +
[[Category: Argyos Y]]
 +
[[Category: Boudker O]]
 +
[[Category: Chadda R]]
 +
[[Category: Ciftci D]]
 +
[[Category: Fortea E]]
 +
[[Category: Huysmans G]]
 +
[[Category: Lee S]]
 +
[[Category: Robertson JL]]

Current revision

CLC-ec1 R230C/L249C/C85A at pH 4.5 100mM Cl Swap

PDB ID 8ga1

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools