This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1q75

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
[[Image:1q75.gif|left|200px]]
+
{{Seed}}
 +
[[Image:1q75.png|left|200px]]
<!--
<!--
Line 9: Line 10:
{{STRUCTURE_1q75| PDB=1q75 | SCENE= }}
{{STRUCTURE_1q75| PDB=1q75 | SCENE= }}
-
'''Solution structure of the dyskeratosis congenita mutant P2b hairpin from human telomerase RNA'''
+
===Solution structure of the dyskeratosis congenita mutant P2b hairpin from human telomerase RNA===
-
==Overview==
+
<!--
-
Autosomal dominant dyskeratosis congenita (DKC) has been linked to mutations in the RNA component of telomerase, the ribonucleoprotein responsible for telomere maintenance. Recent studies have investigated the role of the GC (107-108) --&gt; AG mutation in the conserved P3 helix in the pseudoknot domain of human telomerase RNA. The mutation was found to significantly destabilize the pseudoknot conformation, resulting in a shift in the thermodynamic equilibrium to favor formation of a P2b hairpin intermediate. In the wild-type sequence, the hairpin intermediate was found to form a novel sequence of pyrimidine base pairs in a continuous stem capped by a structured pentaloop. The DKC mutant hairpin was observed to be slightly more stable than the wild-type hairpin, further shifting the pseudoknot-hairpin equilibrium to favor the mutant P2b hairpin. Here we examined the solution structure of the DKC mutant hairpin to identify the reason for this additional stability. We found that the mutant hairpin forms the same stem structure as wild-type and that the additional stabilization observed using optical melting can be explained by the formation of a YNMG-type tetraloop structure, with the last nucleotide of the pentaloop bulged out into the major groove. Our results provide a structural explanation for the increased stability of the mutant hairpin and further our understanding of the effect of this mutation on the structure and stability of the dominant conformation of the pseudoknot domain in this type of DKC.
+
The line below this paragraph, {{ABSTRACT_PUBMED_14624001}}, adds the Publication Abstract to the page
 +
(as it appears on PubMed at http://www.pubmed.gov), where 14624001 is the PubMed ID number.
 +
-->
 +
{{ABSTRACT_PUBMED_14624001}}
==About this Structure==
==About this Structure==
-
Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q75 OCA].
+
Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q75 OCA].
==Reference==
==Reference==
Line 27: Line 31:
[[Category: Uucg]]
[[Category: Uucg]]
[[Category: Ynmg]]
[[Category: Ynmg]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 05:57:07 2008''
+
 
 +
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 00:22:47 2008''

Revision as of 21:22, 27 July 2008

Image:1q75.png

Template:STRUCTURE 1q75

Solution structure of the dyskeratosis congenita mutant P2b hairpin from human telomerase RNA

Template:ABSTRACT PUBMED 14624001

About this Structure

Full experimental information is available from OCA.

Reference

YNMG tetraloop formation by a dyskeratosis congenita mutation in human telomerase RNA., Theimer CA, Finger LD, Feigon J, RNA. 2003 Dec;9(12):1446-55. PMID:14624001

Page seeded by OCA on Mon Jul 28 00:22:47 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1q75"
Personal tools