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1ql1

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[[Image:1ql1.gif|left|200px]]
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{{STRUCTURE_1ql1| PDB=1ql1 | SCENE= }}
{{STRUCTURE_1ql1| PDB=1ql1 | SCENE= }}
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'''INOVIRUS (FILAMENTOUS BACTERIOPHAGE) STRAIN PF1 MAJOR COAT PROTEIN ASSEMBLY'''
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===INOVIRUS (FILAMENTOUS BACTERIOPHAGE) STRAIN PF1 MAJOR COAT PROTEIN ASSEMBLY===
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==Overview==
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The major coat protein in the capsid of Pf1 filamentous bacteriophage (Inovirus) forms a helical assembly of about 7000 identical protein subunits, each of which contains 46 amino-acid residues and can be closely approximated by a single gently curved alpha-helix. Since the viral DNA occupies the core of the tubular capsid and appears to make no significant specific interactions with the capsid proteins, the capsid is a simple model system for the study of the static and dynamic properties of alpha-helix assembly. The capsid undergoes a reversible temperature-induced structural transition at about 283 K between two slightly different helix forms. The two forms can coexist without an intermediate state, consistent with a first-order structural phase transition. The molecular model of the higher temperature form was refined using improved X-ray fibre diffraction data and new refinement and validation methods. The refinement indicates that the two forms are related by a change in the orientation of the capsid subunits within the virion, without a significant change in local conformation of the subunits. On the higher temperature diffraction pattern there is a region of observed intensity that is not consistent with a simple helix of identical subunits; it is proposed that the structure involves groups of three subunits which each have a slightly different orientation within the group. The grouping of subunits suggests that a change in subunit libration frequency could be the basis of the Pf1 structural transition; calculations from the model are used to explore this idea.
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(as it appears on PubMed at http://www.pubmed.gov), where 10666593 is the PubMed ID number.
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{{ABSTRACT_PUBMED_10666593}}
==About this Structure==
==About this Structure==
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[[Category: Inovirus]]
[[Category: Inovirus]]
[[Category: Ssdna viruse]]
[[Category: Ssdna viruse]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 06:24:05 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 14:15:51 2008''

Revision as of 11:15, 27 July 2008

Image:1ql1.png

Template:STRUCTURE 1ql1

INOVIRUS (FILAMENTOUS BACTERIOPHAGE) STRAIN PF1 MAJOR COAT PROTEIN ASSEMBLY

Template:ABSTRACT PUBMED 10666593

About this Structure

1QL1 is a Single protein structure of sequence from Pseudomonas phage pf1. Full crystallographic information is available from OCA.

Reference

The molecular structure and structural transition of the alpha-helical capsid in filamentous bacteriophage Pf1., Welsh LC, Symmons MF, Marvin DA, Acta Crystallogr D Biol Crystallogr. 2000 Feb;56(Pt 2):137-50. PMID:10666593

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