This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1rkp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
[[Image:1rkp.jpg|left|200px]]
+
{{Seed}}
 +
[[Image:1rkp.png|left|200px]]
<!--
<!--
Line 9: Line 10:
{{STRUCTURE_1rkp| PDB=1rkp | SCENE= }}
{{STRUCTURE_1rkp| PDB=1rkp | SCENE= }}
-
'''Crystal structure of PDE5A1-IBMX'''
+
===Crystal structure of PDE5A1-IBMX===
-
==Overview==
+
<!--
-
Cyclic nucleotide phosphodiesterases (PDEs) are a superfamily of enzymes controlling cellular concentrations of the second messengers cAMP and cGMP. Crystal structures of the catalytic domains of cGMP-specific PDE5A1 and cAMP-specific PDE4D2 in complex with the nonselective inhibitor 3-isobutyl-1-methylxanthine have been determined at medium resolution. The catalytic domain of PDE5A1 has the same topological folding as that of PDE4D2, but three regions show different tertiary structures, including residues 79-113, 208-224 (H-loop), and 341-364 (M-loop) in PDE4D2 or 535-566, 661-676, and 787-812 in PDE5A1, respectively. Because H- and M-loops are involved in binding of the selective inhibitors, the different conformations of the loops, thus the distinct shapes of the active sites, will be a determinant of inhibitor selectivity in PDEs. IBMX binds to a subpocket that comprises key residues Ile-336, Phe-340, Gln-369, and Phe-372 of PDE4D2 or Val-782, Phe-786, Gln-817, and Phe-820 of PDE5A1. This subpocket may be a common site for binding nonselective inhibitors of PDEs.
+
The line below this paragraph, {{ABSTRACT_PUBMED_14668322}}, adds the Publication Abstract to the page
 +
(as it appears on PubMed at http://www.pubmed.gov), where 14668322 is the PubMed ID number.
 +
-->
 +
{{ABSTRACT_PUBMED_14668322}}
==About this Structure==
==About this Structure==
Line 31: Line 35:
[[Category: Pde5a]]
[[Category: Pde5a]]
[[Category: Viagra]]
[[Category: Viagra]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 07:36:54 2008''
+
 
 +
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 15:10:08 2008''

Revision as of 12:10, 28 July 2008

Image:1rkp.png

Template:STRUCTURE 1rkp

Crystal structure of PDE5A1-IBMX

Template:ABSTRACT PUBMED 14668322

About this Structure

1RKP is a Single protein structure of sequence from Homo sapiens. Full crystallographic information is available from OCA.

Reference

Crystal structures of phosphodiesterases 4 and 5 in complex with inhibitor 3-isobutyl-1-methylxanthine suggest a conformation determinant of inhibitor selectivity., Huai Q, Liu Y, Francis SH, Corbin JD, Ke H, J Biol Chem. 2004 Mar 26;279(13):13095-101. Epub 2003 Dec 10. PMID:14668322

Page seeded by OCA on Mon Jul 28 15:10:08 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1rkp"
Personal tools