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Sandbox Ben Whiteside

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=== Transmembrane Domain ===
=== Transmembrane Domain ===
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<scene name='10/1038828/Tmd_interactions_with_the_plb/5'>Hydrophoic R groups within the transmembrane domain</scene> help anchor the receptor within the cell membrane.
+
Within the transmembrane domain of the CTR, hydrophobic R groups span the phospholipid bilayer, anchoring the protein into the cell membrane upon amylin binding to the receptor.
=== N Terminal Disulfide ===
=== N Terminal Disulfide ===
=== Receptor Activity Modifying Proteins ===
=== Receptor Activity Modifying Proteins ===
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<scene name='10/1038828/Ramp_ctr_interface/7'>RAMP CTR Interface </scene>
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<scene name='10/1038828/Ramp_ctr_interface/8'>RAMP CTR Interface </scene> is a key interaction that stabilizes the protein complex and positions the receptor to favorably bind to amylin. The RAMP-CTR interface extends into the plasma membrane, providing additional non-covalent bonding between the protein complex and the cell membrane.
==== Extracellular Domain - RAMP interactions ====
==== Extracellular Domain - RAMP interactions ====
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<scene name='10/1038828/Ctr_ramp_ecd_stablization/5'>RAMP CTR Extracellular Domain Interaction</scene>
+
<scene name='10/1038828/Ctr_ramp_ecd_stablization/6'>RAMP CTR Extracellular Domain Interaction</scene>
=== Bypass Motif ===
=== Bypass Motif ===
=== G-alpha Interactions with CTR TMD ===
=== G-alpha Interactions with CTR TMD ===
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<scene name='10/1038828/Ctr_g_alpha/9'>G alpha interactions with the Calcitonin Receptor</scene>
+
<scene name='10/1038828/Ctr_g_alpha/10'>G alpha interactions with the Calcitonin Receptor 1 </scene>
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<scene name='10/1038828/Ctr_g_alpha/11'>G alpha interactions with the Calcitonin Receptor 2 </scene>
== Function ==
== Function ==

Revision as of 13:24, 16 April 2024

AMYR

AMYR Bound to Amylin

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References

  1. Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
  2. Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
  3. Ransey E, Paredes E, Dey SK, Das SR, Heroux A, Macbeth MR. Crystal structure of the Entamoeba histolytica RNA lariat debranching enzyme EhDbr1 reveals a catalytic Zn(2+) /Mn(2+) heterobinucleation. FEBS Lett. 2017 Jul;591(13):2003-2010. doi: 10.1002/1873-3468.12677. Epub 2017, Jun 14. PMID:28504306 doi:http://dx.doi.org/10.1002/1873-3468.12677
  4. Cao J, Belousoff MJ, Liang YL, Johnson RM, Josephs TM, Fletcher MM, Christopoulos A, Hay DL, Danev R, Wootten D, Sexton PM. A structural basis for amylin receptor phenotype. Science. 2022 Mar 25;375(6587):eabm9609. PMID:35324283 doi:10.1126/science.abm9609


Student Contributors

Ben Whiteside, Mathias Vander Eide, Andrew Helmerich,

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