This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1s05

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
[[Image:1s05.gif|left|200px]]
+
{{Seed}}
 +
[[Image:1s05.png|left|200px]]
<!--
<!--
Line 9: Line 10:
{{STRUCTURE_1s05| PDB=1s05 | SCENE= }}
{{STRUCTURE_1s05| PDB=1s05 | SCENE= }}
-
'''NMR-validated structural model for oxidized R.palustris cytochrome c556'''
+
===NMR-validated structural model for oxidized R.palustris cytochrome c556===
-
==Overview==
+
<!--
-
The structure of oxidized Rhodopseudomonas palustris cytochrome c(556) has been modeled after that of high-spin cytochrome c' from the same bacterium, the latter being the protein with the greatest sequence identity (35%) among all sequenced proteins in the genomes. The two proteins differ in the number of ligands to iron and in spin state, the former being six-coordinate low-spin and the latter five-coordinate high-spin. In order to validate this modeled structure, several structural restraints were obtained by performing a restricted set of NMR experiments, without performing a complete assignment of the protein signals. The aim was to exploit the special restraints arising from the paramagnetism of the metal ion. A total of 43 residual-dipolar-coupling and 74 pseudocontact-shift restraints, which together sampled all regions of the protein, were used in conjunction with over 40 routinely obtained NOE distance restraints. A calculation procedure was undertaken combining the program MODELLER and the solution structure determination program PARAMAGNETIC DYANA, which includes paramagnetism-based restraints. The directions and magnitude of the magnetic susceptibility anisotropy tensor were also calculated. The approach readily provides useful results, especially for paramagnetic metalloproteins of moderate to large dimensions.
+
The line below this paragraph, {{ABSTRACT_PUBMED_14735333}}, adds the Publication Abstract to the page
 +
(as it appears on PubMed at http://www.pubmed.gov), where 14735333 is the PubMed ID number.
 +
-->
 +
{{ABSTRACT_PUBMED_14735333}}
==About this Structure==
==About this Structure==
-
1S05 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Rhodopseudomonas_palustris Rhodopseudomonas palustris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S05 OCA].
+
1S05 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Rhodopseudomonas_palustris Rhodopseudomonas palustris]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S05 OCA].
==Reference==
==Reference==
Line 29: Line 33:
[[Category: Winkler, J R.]]
[[Category: Winkler, J R.]]
[[Category: This is a model obtained by nmr-restrained modeling and minimization.]]
[[Category: This is a model obtained by nmr-restrained modeling and minimization.]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 08:07:49 2008''
+
 
 +
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 13:35:00 2008''

Revision as of 10:35, 28 July 2008

Image:1s05.png

Template:STRUCTURE 1s05

NMR-validated structural model for oxidized R.palustris cytochrome c556

Template:ABSTRACT PUBMED 14735333

About this Structure

1S05 is a Single protein structure of sequence from Rhodopseudomonas palustris. Full experimental information is available from OCA.

Reference

NMR-validated structural model for oxidized Rhodopseudomonas palustris cytochrome c(556)., Bertini I, Faraone-Mennella J, Gray HB, Luchinat C, Parigi G, Winkler JR, J Biol Inorg Chem. 2004 Mar;9(2):224-30. Epub 2004 Jan 20. PMID:14735333

Page seeded by OCA on Mon Jul 28 13:35:00 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1s05"
Personal tools