8k9u

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Current revision (07:41, 3 July 2024) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 8k9u is ON HOLD until Paper Publication
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==Crystal structure of plasmodium LysRS complexing with ASP3026 derived LysRS inhibitor 2 (ADKI2)==
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<StructureSection load='8k9u' size='340' side='right'caption='[[8k9u]], [[Resolution|resolution]] 2.83&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[8k9u]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Plasmodium_falciparum_CAMP/Malaysia Plasmodium falciparum CAMP/Malaysia]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8K9U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8K9U FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.83&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=JSL:~{N}4-(2,4-dimethoxyphenyl)-~{N}2-(2-propan-2-ylsulfonylphenyl)-1,3,5-triazine-2,4-diamine'>JSL</scene>, <scene name='pdbligand=LYS:LYSINE'>LYS</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8k9u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8k9u OCA], [https://pdbe.org/8k9u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8k9u RCSB], [https://www.ebi.ac.uk/pdbsum/8k9u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8k9u ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/A0A024X378_PLAFC A0A024X378_PLAFC]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Aminoacyl-tRNA synthetases (aaRSs) play a central role in the translation of genetic code, serving as attractive drug targets. Within this family, the lysyl-tRNA synthetase (LysRS) constitutes a promising antimalarial target. ASP3026, an anaplastic lymphoma kinase (ALK) inhibitor was recently identified as a novel Plasmodium falciparum LysRS (PfLysRS) inhibitor. Here, based on cocrystal structures and biochemical experiments, we developed a series of ASP3026 analogues to improve the selectivity and potency of LysRS inhibition. The leading compound 36 showed a dissociation constant of 15.9 nM with PfLysRS. The inhibitory efficacy on PfLysRS and parasites has been enhanced. Covalent attachment of L-lysine to compound 36 resulted in compound 36K3, which exhibited further increased inhibitory activity against PfLysRS but significantly decreased activity against ALK. However, its inhibitory activity against parasites did not improve, suggesting potential future optimization directions. This study presents a new example of derivatization of kinase inhibitors repurposed to inhibit aaRS.
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Authors: Zhou, J., Xia, M., Yang, G., Li, P., Fang, P.
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Structure-guided conversion from an anaplastic lymphoma kinase inhibitor into Plasmodium lysyl-tRNA synthetase selective inhibitors.,Zhou J, Xia M, Huang Z, Qiao H, Yang G, Qian Y, Li P, Zhang Z, Gao X, Jiang L, Wang J, Li W, Fang P Commun Biol. 2024 Jun 18;7(1):742. doi: 10.1038/s42003-024-06455-4. PMID:38890421<ref>PMID:38890421</ref>
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Description: Crystal structure of plasmodium LysRS complexing with ASP3026 derived LysRS inhibitor 2 (ADKI2)
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Li, P]]
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<div class="pdbe-citations 8k9u" style="background-color:#fffaf0;"></div>
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[[Category: Zhou, J]]
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== References ==
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[[Category: Yang, G]]
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<references/>
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[[Category: Fang, P]]
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__TOC__
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[[Category: Xia, M]]
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Plasmodium falciparum CAMP/Malaysia]]
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[[Category: Fang P]]
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[[Category: Li P]]
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[[Category: Xia M]]
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[[Category: Yang G]]
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[[Category: Zhou J]]

Current revision

Crystal structure of plasmodium LysRS complexing with ASP3026 derived LysRS inhibitor 2 (ADKI2)

PDB ID 8k9u

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