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| | {{STRUCTURE_1slj| PDB=1slj | SCENE= }} | | {{STRUCTURE_1slj| PDB=1slj | SCENE= }} |
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| - | '''Solution structure of the S1 domain of RNase E from E. coli'''
| + | ===Solution structure of the S1 domain of RNase E from E. coli=== |
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| - | ==Overview==
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| - | S1 domains occur in four of the major enzymes of mRNA decay in Escherichia coli: RNase E, PNPase, RNase II, and RNase G. Here, we report the structure of the S1 domain of RNase E, determined by both X-ray crystallography and NMR spectroscopy. The RNase E S1 domain adopts an OB-fold, very similar to that found with PNPase and the major cold shock proteins, in which flexible loops are appended to a well-ordered five-stranded beta-barrel core. Within the crystal lattice, the protein forms a dimer stabilized primarily by intermolecular hydrophobic packing. Consistent with this observation, light-scattering, chemical crosslinking, and NMR spectroscopic measurements confirm that the isolated RNase E S1 domain undergoes a specific monomer-dimer equilibrium in solution with a K(D) value in the millimolar range. The substitution of glycine 66 with serine dramatically destabilizes the folded structure of this domain, thereby providing an explanation for the temperature-sensitive phenotype associated with this mutation in full-length RNase E. Based on amide chemical shift perturbation mapping, the binding surface for a single-stranded DNA dodecamer (K(D)=160(+/-40)microM) was identified as a groove of positive electrostatic potential containing several exposed aromatic side-chains. This surface, which corresponds to the conserved ligand-binding cleft found in numerous OB-fold proteins, lies distal to the dimerization interface, such that two independent oligonucleotide-binding sites can exist in the dimeric form of the RNase E S1 domain. Based on these data, we propose that the S1 domain serves a dual role of dimerization to aid in the formation of the tetrameric quaternary structure of RNase E as described by Callaghan et al. in 2003 and of substrate binding to facilitate RNA hydrolysis by the adjacent catalytic domains within this multimeric enzyme.
| + | The line below this paragraph, {{ABSTRACT_PUBMED_15312761}}, adds the Publication Abstract to the page |
| | + | (as it appears on PubMed at http://www.pubmed.gov), where 15312761 is the PubMed ID number. |
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| | + | {{ABSTRACT_PUBMED_15312761}} |
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| | ==About this Structure== | | ==About this Structure== |
| - | 1SLJ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SLJ OCA]. | + | 1SLJ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SLJ OCA]. |
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| | ==Reference== | | ==Reference== |
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| | [[Category: Ob-fold]] | | [[Category: Ob-fold]] |
| | [[Category: Rna-binding]] | | [[Category: Rna-binding]] |
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 08:51:14 2008'' | + | |
| | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 05:04:23 2008'' |
Revision as of 02:04, 28 July 2008
Template:STRUCTURE 1slj
Solution structure of the S1 domain of RNase E from E. coli
Template:ABSTRACT PUBMED 15312761
About this Structure
1SLJ is a Single protein structure of sequence from Escherichia coli. Full experimental information is available from OCA.
Reference
Structural characterization of the RNase E S1 domain and identification of its oligonucleotide-binding and dimerization interfaces., Schubert M, Edge RE, Lario P, Cook MA, Strynadka NC, Mackie GA, McIntosh LP, J Mol Biol. 2004 Jul 30;341(1):37-54. PMID:15312761
Page seeded by OCA on Mon Jul 28 05:04:23 2008
