8yvc

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Current revision (20:01, 11 December 2024) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 8yvc is ON HOLD until Paper Publication
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==Cryo-EM structure of carboxysomal midi-shell:icosahedral assembly from CsoS4A/4B/1A/1B/1C/1D and CsoS2 C-terminal co-expression (T = 19)==
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<StructureSection load='8yvc' size='340' side='right'caption='[[8yvc]], [[Resolution|resolution]] 3.04&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[8yvc]] is a 21 chain structure with sequence from [https://en.wikipedia.org/wiki/Halothiobacillus_neapolitanus Halothiobacillus neapolitanus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8YVC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8YVC FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.04&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8yvc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8yvc OCA], [https://pdbe.org/8yvc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8yvc RCSB], [https://www.ebi.ac.uk/pdbsum/8yvc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8yvc ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CSOSA_HALNC CSOSA_HALNC] The major shell protein of the carboxysome, a polyhedral inclusion where RuBisCO (ribulose bisphosphate carboxylase, ccbL-ccbS) is sequestered (PubMed:16535117, PubMed:7934888). Assembles into hexamers which make sheets that form the facets of the polyhedral carboxysome (PubMed:17518518). The shell probably limits the diffusion of CO(2) into and out of the carboxysome (Probable). Molecular modeling shows the central pore of this protein is selectively permeable to anions such as HCO(3) rather than CO(2) or O(2) (Probable). There are estimated to be 2970 CsoS1A/CsoS1C proteins per carboxysome (the proteins differ by only 1 residue) (Ref.5).<ref>PMID:16535117</ref> <ref>PMID:17518518</ref> <ref>PMID:7934888</ref> <ref>PMID:22184212</ref> <ref>PMID:18258595</ref> <ref>PMID:30193460</ref> Unlike beta-carboxysomes, alpha-carboxysomes (Cb) can form without cargo protein. CsoS2 is essential for Cb formation and is also capable of targeting foreign proteins to the Cb. The Cb shell assembles with the aid of CsoS2; CsoS1A, CsoS1B and CsoS1C form the majority of the shell while CsoS4A and CsoS4B form vertices. CsoS1D forms pseudohexamers that probably control metabolite flux into and out of the shell.<ref>PMID:25826651</ref> <ref>PMID:33116131</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Intracellular compartmentalization enhances biological reactions, crucial for cellular function and survival. An example is the carboxysome, a bacterial microcompartment for CO(2) fixation. The carboxysome uses a polyhedral protein shell made of hexamers, pentamers, and trimers to encapsulate Rubisco, increasing CO(2) levels near Rubisco to enhance carboxylation. Despite their role in the global carbon cycle, the molecular mechanisms behind carboxysome shell assembly remain unclear. Here, we present a structural characterization of alpha-carboxysome shells generated from recombinant systems, which contain all shell proteins and the scaffolding protein CsoS2. Atomic-resolution cryo-electron microscopy of the shell assemblies, with a maximal size of 54 nm, unveil diverse assembly interfaces between shell proteins, detailed interactions of CsoS2 with shell proteins to drive shell assembly, and the formation of heterohexamers and heteropentamers by different shell protein paralogs, facilitating the assembly of larger empty shells. Our findings provide mechanistic insights into the construction principles of alpha-carboxysome shells and the role of CsoS2 in governing alpha-carboxysome assembly and functionality.
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Authors: Wang, P., Li, J.X., Li, T.P., Li, K., Ng, P.C., Wang, S.M., Chriscoli, V., Basle, A., Marles-Wright, J., Zhang, Y.Z., Liu, L.N.
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Molecular principles of the assembly and construction of a carboxysome shell.,Wang P, Li J, Li T, Li K, Ng PC, Wang S, Chriscoli V, Basle A, Marles-Wright J, Zhang YZ, Liu LN Sci Adv. 2024 Nov 29;10(48):eadr4227. doi: 10.1126/sciadv.adr4227. Epub 2024 Nov , 29. PMID:39612341<ref>PMID:39612341</ref>
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Description: Cryo-EM structure of carboxysomal midi-shell:icosahedral assembly from CsoS4A/4B/1A/1B/1C/1D and CsoS2 C-terminal co-expression (T = 19)
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Wang, S.M]]
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<div class="pdbe-citations 8yvc" style="background-color:#fffaf0;"></div>
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[[Category: Chriscoli, V]]
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== References ==
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[[Category: Zhang, Y.Z]]
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<references/>
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[[Category: Liu, L.N]]
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__TOC__
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[[Category: Ng, P.C]]
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</StructureSection>
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[[Category: Li, J.X]]
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[[Category: Halothiobacillus neapolitanus]]
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[[Category: Wang, P]]
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[[Category: Large Structures]]
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[[Category: Li, T.P]]
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[[Category: Basle A]]
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[[Category: Marles-Wright, J]]
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[[Category: Chriscoli V]]
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[[Category: Li, K]]
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[[Category: Li JX]]
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[[Category: Basle, A]]
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[[Category: Li K]]
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[[Category: Li TP]]
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[[Category: Liu LN]]
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[[Category: Marles-Wright J]]
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[[Category: Ng PC]]
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[[Category: Wang P]]
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[[Category: Wang SM]]
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[[Category: Zhang YZ]]

Current revision

Cryo-EM structure of carboxysomal midi-shell:icosahedral assembly from CsoS4A/4B/1A/1B/1C/1D and CsoS2 C-terminal co-expression (T = 19)

PDB ID 8yvc

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