9fyj

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m (Protected "9fyj" [edit=sysop:move=sysop])
Current revision (10:33, 12 March 2025) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 9fyj is ON HOLD until Paper Publication
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==N-terminal domain of human galectin-8 in complex with an alpha-galactoside ligand==
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<StructureSection load='9fyj' size='340' side='right'caption='[[9fyj]], [[Resolution|resolution]] 1.08&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[9fyj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9FYJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9FYJ FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.08&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A1IHE:2-[[(2~{R},3~{R},4~{S},5~{S},6~{R})-2-(3,4-dichlorophenyl)sulfanyl-6-(hydroxymethyl)-5-oxidanyl-3-prop-2-ynoxy-oxan-4-yl]oxymethyl]-3-methyl-benzimidazole-5-carboxylic+acid'>A1IHE</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9fyj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9fyj OCA], [https://pdbe.org/9fyj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9fyj RCSB], [https://www.ebi.ac.uk/pdbsum/9fyj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9fyj ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/LEG8_HUMAN LEG8_HUMAN] Lectin with a marked preference for 3'-O-sialylated and 3'-O-sulfated glycans.<ref>PMID:21288902</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Galectin-8 is a tandem-repeat galectin consisting of two distinct carbohydrate recognition domains and is a potential drug target. We have developed a library of galectin-8N inhibitors that exhibit high nanomolar K(d) values as determined by a competitive fluorescence polarization assay. A detailed thermodynamic analysis of the binding of D-galactosides to galectin-8N by isothermal titration calorimetry reveals important differences in enthalpic and/or entropic contributions to binding. Contrary to expectations, the binding of 2-O-propargyl-D-galactoside was found to strongly increase the binding enthalpy, whereas the binding of 2-O-carboxymethylene-D-galactoside was surprisingly less enthalpy-driven. The results of our work suggest that the ethynyl group can successfully replace the carboxylate group when targeting the water-exposed guanidine moiety of a critical arginine residue. This results in only a minor loss of affinity and an adjusted enthalpic contribution to the overall binding due to non-canonical cation-pi interactions, as evidenced by the obtained crystal structure of 2-O-propargyl-D-galactoside in complex with the N-terminal domain of galectin-8. Such an interaction has neither been identified nor discussed to date in a small-molecule ligand-protein complex.
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Authors: Adrover Forteza, J., Puric, E., Nilsson, U.J., Anderluh, M., Logan, D.T.
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Nanomolar inhibitor of the galectin-8 N-terminal domain binds via a non-canonical cation-pi interaction.,Puric E, Hassan M, Sjovall F, Tomasic T, Pevec M, Lah J, Forteza JA, Sundin A, Leffler H, Nilsson UJ, Logan DT, Anderluh M Commun Chem. 2025 Feb 24;8(1):59. doi: 10.1038/s42004-025-01458-6. PMID:39994474<ref>PMID:39994474</ref>
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Description: N-terminal domain of human galectin-8 in complex with an alpha-galactoside ligand
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Logan, D.T]]
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<div class="pdbe-citations 9fyj" style="background-color:#fffaf0;"></div>
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[[Category: Puric, E]]
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== References ==
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[[Category: Nilsson, U.J]]
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<references/>
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[[Category: Anderluh, M]]
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__TOC__
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[[Category: Adrover Forteza, J]]
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</StructureSection>
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[[Category: Homo sapiens]]
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[[Category: Large Structures]]
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[[Category: Adrover Forteza J]]
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[[Category: Anderluh M]]
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[[Category: Logan DT]]
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[[Category: Nilsson UJ]]
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[[Category: Puric E]]

Current revision

N-terminal domain of human galectin-8 in complex with an alpha-galactoside ligand

PDB ID 9fyj

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