ModelArchive
From Proteopedia
| Line 1: | Line 1: | ||
[https://modelarchive.org ModelArchive] is the archive for theoretical macromolecular structure models that are not based on experimental data (not [[Empirical models|empirical]]). Such models were removed from the [[wwPDB]] in 2006<ref>PMID: 16955948</ref>. ModelArchive complements the [[wwPDB]] archive of empirical models, and the [https://pdb-dev.wwpdb.org/ PDB-Dev] archive for integrative structures that combine non-empirical and empirical models.<ref name="paraphrased">This paragraph is paraphrased from the ModelArchive.Org website.</ref> | [https://modelarchive.org ModelArchive] is the archive for theoretical macromolecular structure models that are not based on experimental data (not [[Empirical models|empirical]]). Such models were removed from the [[wwPDB]] in 2006<ref>PMID: 16955948</ref>. ModelArchive complements the [[wwPDB]] archive of empirical models, and the [https://pdb-dev.wwpdb.org/ PDB-Dev] archive for integrative structures that combine non-empirical and empirical models.<ref name="paraphrased">This paragraph is paraphrased from the ModelArchive.Org website.</ref> | ||
| - | + | ==Contents== | |
| - | + | "Any type of macromolecular structure which would otherwise be suitable for the PDB but whose coordinates are not based on experimental data can be deposited in ModelArchive." "The modelling methods can be pure in silico predictions as found in de novo models or based on experimental structures such as homology models or modified structures including docked ligands, modelled variants, post-translational modifications (e.g. glycosylated structures), etc."<ref name="quoted">Quoted from [https://www.modelarchive.org/help ModelArchive Help].</ref> | |
| - | "Any type of macromolecular structure which would otherwise be suitable for the PDB but whose coordinates are not based on experimental data can be deposited in ModelArchive." "The modelling methods can be pure in silico predictions as found in de novo models or based on experimental structures such as homology models or modified structures including docked ligands, modelled variants, post-translational modifications (e.g. glycosylated structures), etc." | + | |
| - | + | ==Purpose== | |
| - | "The main purpose of a deposited model is to '''supplement a manuscript''' for which the model was generated and to '''make the model accessible''' for the interested reader. The secondary purpose is to make all deposited models findable, accessible, interoperable and reusable (FAIR) for interested researchers. As a result, ModelArchive provides a '''unique stable accession code (DOI)''' for each deposited model, which can be directly referenced in the corresponding manuscripts." | + | "The main purpose of a deposited model is to '''supplement a manuscript''' for which the model was generated and to '''make the model accessible''' for the interested reader. The secondary purpose is to make all deposited models findable, accessible, interoperable and reusable (FAIR) for interested researchers. As a result, ModelArchive provides a '''unique stable accession code (DOI)''' for each deposited model, which can be directly referenced in the corresponding manuscripts."<ref name="quoted" /> |
| - | </ | + | |
==References== | ==References== | ||
<references /> | <references /> | ||
Revision as of 00:49, 18 August 2024
ModelArchive is the archive for theoretical macromolecular structure models that are not based on experimental data (not empirical). Such models were removed from the wwPDB in 2006[1]. ModelArchive complements the wwPDB archive of empirical models, and the PDB-Dev archive for integrative structures that combine non-empirical and empirical models.[2]
Contents
"Any type of macromolecular structure which would otherwise be suitable for the PDB but whose coordinates are not based on experimental data can be deposited in ModelArchive." "The modelling methods can be pure in silico predictions as found in de novo models or based on experimental structures such as homology models or modified structures including docked ligands, modelled variants, post-translational modifications (e.g. glycosylated structures), etc."[3]
Purpose
"The main purpose of a deposited model is to supplement a manuscript for which the model was generated and to make the model accessible for the interested reader. The secondary purpose is to make all deposited models findable, accessible, interoperable and reusable (FAIR) for interested researchers. As a result, ModelArchive provides a unique stable accession code (DOI) for each deposited model, which can be directly referenced in the corresponding manuscripts."[3]
References
- ↑ Berman HM, Burley SK, Chiu W, Sali A, Adzhubei A, Bourne PE, Bryant SH, Dunbrack RL Jr, Fidelis K, Frank J, Godzik A, Henrick K, Joachimiak A, Heymann B, Jones D, Markley JL, Moult J, Montelione GT, Orengo C, Rossmann MG, Rost B, Saibil H, Schwede T, Standley DM, Westbrook JD. Outcome of a workshop on archiving structural models of biological macromolecules. Structure. 2006 Aug;14(8):1211-7. PMID:16955948 doi:10.1016/j.str.2006.06.005
- ↑ This paragraph is paraphrased from the ModelArchive.Org website.
- ↑ 3.0 3.1 Quoted from ModelArchive Help.
