9j03

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Current revision (05:45, 14 May 2025) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 9j03 is ON HOLD until Paper Publication
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==Cyro-EM Structure of Human TLR4/MD-2/DLAM1 Complex==
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<StructureSection load='9j03' size='340' side='right'caption='[[9j03]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[9j03]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9J03 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9J03 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2IL:(3R)-3-(dodecanoyloxy)tetradecanoic+acid'>2IL</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=GP4:GLUCOSAMINE+4-PHOSPHATE'>GP4</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=X6Z:[(2~{R},3~{S},4~{S},5~{S})-5-methoxy-3,4,6-tris(oxidanyl)oxan-2-yl]methyl+dihydrogen+phosphate'>X6Z</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9j03 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9j03 OCA], [https://pdbe.org/9j03 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9j03 RCSB], [https://www.ebi.ac.uk/pdbsum/9j03 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9j03 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/B3Y6A6_PANTR B3Y6A6_PANTR]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The mammalian pattern-recognition receptor TLR4/MD-2 (Toll-like receptor 4/myeloid differentiation factor-2) can be activated by a wide variety of pathogen-associated and endogenous molecules, with Gram-negative bacterial lipopolysaccharide (LPS) being the primary natural TLR4 agonist. Activation of TLR4 triggers cellular signaling that enables the beneficial innate immune responses and enhances adaptive immunity, thereby emphasizing the potential of TLR4 agonists for the management of diseases with an immunopathological background and for use as vaccine adjuvants. Given the challenges associated with LPS-derived products, including structural complexity, heterogeneity, toxicity, and species specificity, synthetic molecules targeting TLR4/MD-2 offer a promising alternative. Here, we elucidate the structural basis for the recognition of synthetic LPS-mimicking glycolipids, Disaccharide Lipid A Mimetics (DLAMs), by human and mouse TLR4/MD-2 through cryo-EM structures of six dimeric [TLR4/MD-2/ligand](2) complexes resolved at 2.2-3.1 A. We reveal that the specific binding modes of DLAMs, distinct from those of LPS, are essential for the species-independent TLR4 agonistic activity. DLAMs function as a molecular bridge, effectively induce the dimerization of TLR4/MD-2 complexes through specific carbohydrate structure-relevant ligand-protein interactions. Our findings reveal the distinct molecular modes of TLR4 activation, and provide a structural basis for the rationale design and development of innovative, highly potent TLR4-targeting immunotherapeutics and adjuvants.
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Authors:
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Structural insight into TLR4/MD-2 activation by synthetic LPS mimetics with distinct binding modes.,Fu Y, Kim H, Lee DS, Han AR, Heine H, Zamyatina A, Kim HM Nat Commun. 2025 May 5;16(1):4164. doi: 10.1038/s41467-025-59550-3. PMID:40325026<ref>PMID:40325026</ref>
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Description:
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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<div class="pdbe-citations 9j03" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Homo sapiens]]
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[[Category: Large Structures]]
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[[Category: Fu Y]]
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[[Category: Kim H]]
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[[Category: Kim HM]]
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[[Category: Zamyatina A]]

Current revision

Cyro-EM Structure of Human TLR4/MD-2/DLAM1 Complex

PDB ID 9j03

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