9kok
From Proteopedia
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- | '''Unreleased structure''' | ||
- | The entry | + | ==Crystal structure of ExaC, an NAD+-dependent aldehyde dehydrogenase, from Pseudomonas aeruginosa== |
+ | <StructureSection load='9kok' size='340' side='right'caption='[[9kok]], [[Resolution|resolution]] 2.40Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[9kok]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_PAO1 Pseudomonas aeruginosa PAO1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9KOK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9KOK FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4Å</td></tr> | ||
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=SCY:S-ACETYL-CYSTEINE'>SCY</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9kok FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9kok OCA], [https://pdbe.org/9kok PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9kok RCSB], [https://www.ebi.ac.uk/pdbsum/9kok PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9kok ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/Q9I2C4_PSEAE Q9I2C4_PSEAE] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | The opportunistic pathogen Pseudomonas aeruginosa (Pa) utilizes ethanol as an energy source, however, ethanol metabolism generates acetaldehyde, a toxic byproduct. To mitigate this toxicity, P. aeruginosa employs aldehyde dehydrogenases (ALDHs) to oxidize acetaldehyde into less harmful compounds. ExaC, an NAD(+)-dependent ALDH from P. aeruginosa (PaExaC) and a member of group X ALDHs, plays a critical role in this detoxification by oxidizing both aldehydes and hydrazones. In this study, we determined the crystal structures of PaExaC in its apo and NAD(+) -bound forms. PaExaC functions as a homodimer, with three distinct domains: an NAD(+) binding domain, a catalytic domain, and an oligomerization domain. Structural analyses revealed that PaExaC's substrate entry channel (SEC) is optimized for size-selective aldehyde metabolism, with Leu120, Tyr462, and Thr302. Comparative structural and docking analyses with other ALDHs further validated PaExaC's preference for small aliphatic aldehydes and hydrazones. These findings highlight PaExaC's role in aldehyde detoxification, facilitating P. aeruginosa survival in diverse environments, and provide structural insights for developing targeted inhibitors to help treat infections. | ||
- | + | Structural analysis of ExaC, an NAD(+)-dependent aldehyde dehydrogenase, from Pseudomonas aeruginosa.,Ko JH, Jeong KH, Son SB, Lee JY Biochem Biophys Res Commun. 2025 Jan;742:151077. doi: 10.1016/j.bbrc.2024.151077. , Epub 2024 Nov 27. PMID:39642707<ref>PMID:39642707</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
- | [[Category: Jeong | + | <div class="pdbe-citations 9kok" style="background-color:#fffaf0;"></div> |
- | [[Category: Ko | + | == References == |
- | [[Category: Lee | + | <references/> |
- | [[Category: Son | + | __TOC__ |
+ | </StructureSection> | ||
+ | [[Category: Large Structures]] | ||
+ | [[Category: Pseudomonas aeruginosa PAO1]] | ||
+ | [[Category: Jeong KH]] | ||
+ | [[Category: Ko JH]] | ||
+ | [[Category: Lee JY]] | ||
+ | [[Category: Son SB]] |
Current revision
Crystal structure of ExaC, an NAD+-dependent aldehyde dehydrogenase, from Pseudomonas aeruginosa
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