9e7l
From Proteopedia
(Difference between revisions)
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| - | '''Unreleased structure''' | ||
| - | + | ==Yeast V-ATPase Vo proton channel bound to nanobody 2WVA7== | |
| + | <StructureSection load='9e7l' size='340' side='right'caption='[[9e7l]], [[Resolution|resolution]] 3.33Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[9e7l]] is a 23 chain structure with sequence from [https://en.wikipedia.org/wiki/Lama_glama Lama glama] and [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9E7L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9E7L FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.33Å</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9e7l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9e7l OCA], [https://pdbe.org/9e7l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9e7l RCSB], [https://www.ebi.ac.uk/pdbsum/9e7l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9e7l ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/VA0D_YEAST VA0D_YEAST] Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. The active enzyme consists of a catalytic V1 domain attached to an integral membrane V0 proton pore complex. This subunit is a non-integral membrane component of the membrane pore domain and is required for proper assembly of the V0 sector. Might be involved in the regulated assembly of V1 subunits onto the membrane sector or alternatively may prevent the passage of protons through V0 pores. | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | The vacuolar ATPase (V-ATPase; V(1)V(o)) is a multi-subunit rotary nanomotor proton pump that acidifies organelles in virtually all eukaryotic cells, and extracellular spaces in some specialized tissues of higher organisms. Evidence suggests that metastatic breast cancers mislocalize V-ATPase to the plasma membrane to promote cell survival and facilitate metastasis, making the V-ATPase a potential drug target. We have generated a library of camelid single-domain antibodies (Nanobodies; Nbs) against lipid-nanodisc reconstituted yeast V-ATPase V(o) proton channel subcomplex. Here, we present an in-depth characterization of three anti-V(o) Nbs using biochemical and biophysical in vitro experiments. We find that the Nbs bind V(o) with high affinity, with one Nb inhibiting holoenzyme activity and another one preventing enzyme assembly. Using cryoEM, we find that two of the Nbs bind the c subunit ring of the V(o) on the lumen side of the complex. Additionally, we show that one of the Nbs raised against yeast V(o) can pull down human V-ATPase (HsV(1)V(o)). Our research demonstrates Nb versatility to target and modulate the activity of the V-ATPase, and highlights the potential for future therapeutic Nb development. | ||
| - | + | Monoclonal nanobodies alter the activity and assembly of the yeast vacuolar H(+)-ATPase.,Knight K, Park JB, Oot RA, Khan MM, Roh SH, Wilkens S bioRxiv [Preprint]. 2025 Jan 11:2025.01.10.632502. doi: , 10.1101/2025.01.10.632502. PMID:39829782<ref>PMID:39829782</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| + | <div class="pdbe-citations 9e7l" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Lama glama]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Saccharomyces cerevisiae]] | ||
| + | [[Category: Knight K]] | ||
| + | [[Category: Park JB]] | ||
| + | [[Category: Roh S-H]] | ||
| + | [[Category: Wilkens S]] | ||
Current revision
Yeast V-ATPase Vo proton channel bound to nanobody 2WVA7
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