9kb8

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Current revision (07:11, 15 October 2025) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 9kb8 is ON HOLD until Paper Publication
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==Cryo-EM structure of LGR4-RSPO2-ZNRF3 complex (1:1:2)==
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<StructureSection load='9kb8' size='340' side='right'caption='[[9kb8]], [[Resolution|resolution]] 3.25&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[9kb8]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9KB8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9KB8 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.25&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9kb8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9kb8 OCA], [https://pdbe.org/9kb8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9kb8 RCSB], [https://www.ebi.ac.uk/pdbsum/9kb8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9kb8 ProSAT]</span></td></tr>
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</table>
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== Disease ==
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[https://www.uniprot.org/uniprot/ZNRF3_HUMAN ZNRF3_HUMAN] Adrenocortical carcinoma.
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== Function ==
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[https://www.uniprot.org/uniprot/ZNRF3_HUMAN ZNRF3_HUMAN] E3 ubiquitin-protein ligase that acts as a negative regulator of the Wnt signaling pathway by mediating the ubiquitination and subsequent degradation of Wnt receptor complex components Frizzled and LRP6. Acts on both canonical and non-canonical Wnt signaling pathway. Acts as a tumor suppressor in the intestinal stem cell zone by inhibiting the Wnt signaling pathway, thereby restricting the size of the intestinal stem cell zone (PubMed:22575959). Along with RSPO2 and RNF43, constitutes a master switch that governs limb specification (By similarity).[UniProtKB:Q08D68]<ref>PMID:22575959</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Leucine-rich repeat-containing G protein-coupled receptor 4 (LGR4) plays a critical role in regulating the wingless-related integration site (Wnt) signaling pathway and is essential for organ development and carcinogenesis. LGR4, along with its ligand R-spondin (RSPO), potentiates Wnt/beta-catenin signaling by recruiting its signaling suppressor, E3 ligase Zinc and Ring Finger 3 (ZNRF3), and inducing its membrane clearance. However, detailed mechanisms underlying this process remain unknown. In this study, we present the cryo-electron microscopy structures of human LGR4, the LGR4-RSPO2 and LGR4-RSPO2-ZNRF3 complexes. Upon RSPO2 binding, LGR4 undergoes no significant conformational changes in its transmembrane and extracellular domain structures or their relative orientations. LGR4, RSPO2, and ZNRF3 assemble into a 2:2:2 complex with the ZNRF3 dimer enclosed at the center. This ternary arrangement and forced dimerization of ZNRF3 likely underpin how LGR4 and RSPO2 potentiate Wnt/beta-catenin signaling by sequestering ZNRF3 from Wnt receptors and facilitating its auto-inactivation. This study provides a structural basis for understanding the regulatory mechanism of Wnt/beta-catenin signaling through the LGR4-RSPO2-ZNRF3 pathway and may offer opportunities for future drug development targeting this axis.
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Authors:
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Structural insights into Wnt/beta-catenin signaling regulation by LGR4, R-spondin, and ZNRF3.,Peng Y, Fujimura A, Asami J, Zhang Z, Shimizu T, Ohto U Nat Commun. 2025 Oct 1;16(1):8337. doi: 10.1038/s41467-025-64129-z. PMID:41034211<ref>PMID:41034211</ref>
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Description:
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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<div class="pdbe-citations 9kb8" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Homo sapiens]]
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[[Category: Large Structures]]
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[[Category: Asami J]]
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[[Category: Fujimura A]]
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[[Category: Ohto U]]
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[[Category: Peng Y]]
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[[Category: Shimizu T]]
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[[Category: Zhang Z]]

Current revision

Cryo-EM structure of LGR4-RSPO2-ZNRF3 complex (1:1:2)

PDB ID 9kb8

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