9hh1

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Current revision (11:27, 16 April 2025) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 9hh1 is ON HOLD
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==LysR Type Transcriptional Regulator LsrB from Agrobacterium tumefaciens==
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<StructureSection load='9hh1' size='340' side='right'caption='[[9hh1]], [[Resolution|resolution]] 3.90&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[9hh1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9HH1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9HH1 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.9&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9hh1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9hh1 OCA], [https://pdbe.org/9hh1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9hh1 RCSB], [https://www.ebi.ac.uk/pdbsum/9hh1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9hh1 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/A9CI74_AGRFC A9CI74_AGRFC]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Pathogenic bacteria often encounter fluctuating reactive oxygen species (ROS) levels, particularly during host infection, necessitating robust redox-sensing mechanisms for survival. The LysR-type transcriptional regulator (LTTR) OxyR is a widely conserved bacterial thiol-based redox sensor. However, members of the Rhizobiales also encode LsrB, a second LTTR with potential redox-sensing function. This study explores the roles of OxyR and LsrB in the plant-pathogen Agrobacterium tumefaciens. Through single and combined deletions, we observed increased H2O2 sensitivity, underscoring their function in oxidative defense. Genome-wide transcriptome profiling under H2O2 exposure revealed that OxyR and LsrB co-regulate key antioxidant genes, including katG, encoding a bifunctional catalase/peroxidase. Agrobacterium tumefaciens LsrB possesses four cysteine residues potentially involved in redox sensing. To elucidate the structural basis for redox-sensing, we applied single-particle cryo-EM (cryogenic electron microscopy) to experimentally confirm an AlphaFold model of LsrB, identifying two proximal cysteine pairs. In vitro thiol-trapping coupled with mass spectrometry confirmed reversible thiol modifications of all four residues, suggesting a functional role in redox regulation. Collectively, these findings reveal that A. tumefaciens employs two cysteine-based redox sensing transcription factors, OxyR and LsrB, to withstand oxidative stress encountered in host and soil environments.
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Authors:
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Two redox-responsive LysR-type transcription factors control the oxidative stress response of Agrobacterium tumefaciens.,Schmidt JJ, Brandenburg VB, Elders H, Shahzad S, Schakermann S, Fiedler R, Knoke LR, Pfander Y, Dietze P, Bille H, Gartner B, Albin LJ, Leichert LI, Bandow JE, Hofmann E, Narberhaus F Nucleic Acids Res. 2025 Mar 20;53(6):gkaf267. doi: 10.1093/nar/gkaf267. PMID:40193708<ref>PMID:40193708</ref>
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Description:
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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<div class="pdbe-citations 9hh1" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Agrobacterium fabrum str. C58]]
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[[Category: Large Structures]]
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[[Category: Elders H]]
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[[Category: Fiedler R]]
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[[Category: Hofmann E]]
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[[Category: Narberhaus F]]
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[[Category: Schmidt JJ]]

Current revision

LysR Type Transcriptional Regulator LsrB from Agrobacterium tumefaciens

PDB ID 9hh1

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