9ks7

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:27, 2 April 2025) (edit) (undo)
 
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 9ks7 is ON HOLD until Paper Publication
+
==Crystal structure of T. rubripes Mincle with glycerol==
 +
<StructureSection load='9ks7' size='340' side='right'caption='[[9ks7]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[9ks7]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Takifugu_rubripes Takifugu rubripes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9KS7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9KS7 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9ks7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9ks7 OCA], [https://pdbe.org/9ks7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9ks7 RCSB], [https://www.ebi.ac.uk/pdbsum/9ks7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9ks7 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A0A3B5KEF3_TAKRU A0A3B5KEF3_TAKRU]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Our bodies are continuously exposed to injurious insults by infection and tissue damage, which are primarily sensed by innate immune receptors to maintain homeostasis. Among such receptors is macrophage-inducible C-type lectin (Mincle, gene symbol CLEC4E), a member of the C-type lectin receptor (CLR) family, which functions as an immune sensor for both pathogens and damaged self. To monitor these injurious stimuli, Mincle recognizes disaccharide-based pathogen-derived glycolipids and monosaccharide-based intracellular metabolites, such as beta-glucosylceramide. Mincle is well-conserved among mammals; however, there are questions that remain unclear, such as from which lower vertebrate did it arise and whether the original ligand was self or non-self. Here, we found homologues of Mincle and its signaling subunit Fc receptor gamma chain (FcRgamma) in lower vertebrates, such as reptiles, amphibians, and fishes. The crystal structure of a Mincle homologue revealed that fish Mincle possesses a narrower sugar-binding pocket than that of mammalian Mincle, and accommodates only monosaccharide moieties. These results suggest that Mincle may have evolved from a self-recognizing receptor, and its sugar-binding pocket widened during evolution, presumably to adapt to disaccharide-based glycolipids derived from life-threatening pathogens.
-
Authors: Ito, T., Nagae, M., Yamasaki, S.
+
Phylogenetic and structural insights into the origin of C-type lectin Mincle in vertebrates.,Ito T, Guenther C, Ishikawa E, Yabuki T, Nagae M, Nakatani Y, Yamasaki S Immunogenetics. 2025 Mar 22;77(1):18. doi: 10.1007/s00251-025-01375-x. PMID:40119899<ref>PMID:40119899</ref>
-
Description: Crystal structure of T. rubripes Mincle with glycerol
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Ito, T]]
+
<div class="pdbe-citations 9ks7" style="background-color:#fffaf0;"></div>
-
[[Category: Nagae, M]]
+
== References ==
-
[[Category: Yamasaki, S]]
+
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Takifugu rubripes]]
 +
[[Category: Ito T]]
 +
[[Category: Nagae M]]
 +
[[Category: Yamasaki S]]

Current revision

Crystal structure of T. rubripes Mincle with glycerol

PDB ID 9ks7

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools