Proteopedia:Openfox

From Proteopedia

Revision as of 06:55, 4 February 2025

Problems

• (1) Loading, please wait: message appears twice on seeded pages, i.e: http://proteopedia.openfox.io/w/2lev

• (2) no structure page: See http://proteopedia.openfox.io/w/Test01 , applet should show only the message "I'm ready Click on a green link", instead, it loads a missing structure.

• (3) no applet on [Show preview] when editing a page

• (4) cellular phone/tablet: some pages don't render properly on iPhone, possibly also on other cellular phones and tablets (i.e. http://proteopedia.openfox.io/w/3ef8 ).

• (5) cellular phone/tablet: some pages (i.e. http://proteopedia.openfox.io/w/Journal:Acta_Cryst_D:S205979832000772X) render content on iPhone but text area scrolling and buttons under the applet don't work

• (6) mail: tool "email this user' returns Unknown error in PHP's mail() function.

• (7) mail: never received email with a requested temporary password, possibly same error.

• (8) problems on some of the pages:
  • (8a) Jmol popup: button popup under the applet opens a popup window without content.
  • (8b) missing content/ligands: http://proteopedia.openfox.io/w/2dan
  • (8c) slow loading: i.e: http://proteopedia.openfox.io/w/Hemoglobin
  • (8d) double structure loading by Jmol:, evident on http://proteopedia.openfox.io/w/Hemoglobin where the first structure is incorrect.

• (9) permissions: user student allowed to create pages with any name. Must start with Sandbox

• (10) SAT Scene Authoring Tool
  • (10a) missing controls/options under applet
  • (10b) Undo-Redo not working
  • (10c) Save scene
    • (10c-1) missing preview of caption under applet
    • (10C-2) button Insert scene link not working
  • (10b) Load scene
    • (10b-1) not showing list of scenes lo to load
  • (10c)Colors
    • (10c-1) missing colors palette
  • (10d)Labels
    • (10d-1) mouse click select not working
    • (10d-2) show measurements not working

2025_01_22

• (11) While logged on as Joel_L._Sussman, NO option to edit the page:

http://proteopedia.openfox.io/w/Journal:Acta_Cryst_D:S2059798324008210

2025_01_30

• (12) This page looks spectacularly good, the link load very fast too, and opening page has a molecule:

     http://proteopedia.openfox.io/w/Journal:Acta_Cryst_D:S2059798324008210
     BUT  toward the bottom of the page NONE of the animations work,
     see page: https://proteopedia.org/wiki/index.php/Journal:Acta_Cryst_D:S2059798324008210
     n.b. The boxes with words like "superposition" and "Animation" are not present,  Needs to be fixed and get to work like in proteopedia.org.

• (13) This page has no starting "Jmol" why is this different from the page on (12) above?

     http://proteopedia.openfox.io/w/Journal:Acta_Cryst_D:S2059798324008246
     see corresponding page that works: https://proteopedia.org/wiki/index.php/Journal:Acta_Cryst_D:S2059798324008246
     n.b. NO GREEN Links and No Boxes like around the words "Orth(A) ph 9.0" etc.
     n.b. text for making the boxes and executing the commands are present in the wikitext, see:
     

     no Jmol in the initial view
     n.b. this page has a scene as the opening view of the molecule in text 
     please edit the page and you'll see the wikitext that generates the following scene:

2025_01_30

• (15) PMID does not get converted to complete reference, i.e <ref>PMID:39268708</ref>

     as seen on the bottom of page http://proteopedia.openfox.io/w/Journal:Acta_Cryst_D:S2059798324008210
     looks fine on page https://proteopedia.org/wiki/index.php/Journal:Acta_Cryst_D:S2059798324008210

• (16) No Jmol on page: http://proteopedia.openfox.io/w/Journal:Molecular_Cell:1

     seems to be a pretty general problem for many of the pages listed on:
     http://proteopedia.openfox.io/w/Proteopedia:I3DC

2025_02_04

• (17) No 3D Image of molecule on page: http://proteopedia.openfox.io/w/Introduction_to_protein_structure

     compare to: https://proteopedia.org/wiki/index.php/Introduction_to_protein_structure