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Sandbox Reserved 1844
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(Difference between revisions)
| Line 27: | Line 27: | ||
As the PET substrate binds to the enzyme, its carbonyl bond | As the PET substrate binds to the enzyme, its carbonyl bond | ||
attached to the first benzene ring must be harbored close to serine in | attached to the first benzene ring must be harbored close to serine in | ||
| - | the <scene name='10/1075246/Catalytic_triad3/1'>catalytic triad</scene>(Fig. 2). Serine gets polarized by histidine, which is | + | the <scene name='10/1075246/Catalytic_triad3/1'>catalytic triad</scene> (Fig. 2). Serine gets polarized by histidine, which is |
then stabilized by aspartic acid. Polarized serine will attack the | then stabilized by aspartic acid. Polarized serine will attack the | ||
carbonyl bond (C-O) of the polyester, resulting in a tetrahedral in- | carbonyl bond (C-O) of the polyester, resulting in a tetrahedral in- | ||
| Line 36: | Line 36: | ||
=== Ligand Binding Site === | === Ligand Binding Site === | ||
| + | <scene name='10/1075246/4eb0_with_colored_ligand_stick/1'>Ligand Bound to Enzyme</scene> | ||
hydrophobic pocket from "An engineered PET depolymerase to break down and recycle plastic bottles" | hydrophobic pocket from "An engineered PET depolymerase to break down and recycle plastic bottles" | ||
| - | <scene name='10/1075246/4eb0_with_colored_ligand_stick/1'>Colored Ligand in Stick Form with Enzyme</scene> | ||
[[Image:Final rayed image of binding pocket.png|400 px|right|thumb|Figure 1]] | [[Image:Final rayed image of binding pocket.png|400 px|right|thumb|Figure 1]] | ||
Revision as of 14:09, 10 April 2025
| This Sandbox is Reserved from March 18 through September 1, 2025 for use in the course CH462 Biochemistry II taught by R. Jeremy Johnson and Mark Macbeth at the Butler University, Indianapolis, USA. This reservation includes Sandbox Reserved 1828 through Sandbox Reserved 1846. |
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Leaf Branch Compost Cutinase
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References
- ↑ 1.0 1.1 Tournier V, Topham CM, Gilles A, David B, Folgoas C, Moya-Leclair E, Kamionka E, Desrousseaux ML, Texier H, Gavalda S, Cot M, Guemard E, Dalibey M, Nomme J, Cioci G, Barbe S, Chateau M, Andre I, Duquesne S, Marty A. An engineered PET depolymerase to break down and recycle plastic bottles. Nature. 2020 Apr;580(7802):216-219. doi: 10.1038/s41586-020-2149-4. Epub 2020 Apr, 8. PMID:32269349 doi:http://dx.doi.org/10.1038/s41586-020-2149-4
- ↑ Kolattukudy PE. Biopolyester membranes of plants: cutin and suberin. Science. 1980 May 30;208(4447):990-1000. PMID:17779010 doi:10.1126/science.208.4447.990
- ↑ Burgin T, Pollard BC, Knott BC, Mayes HB, Crowley MF, McGeehan JE, Beckham GT, Woodcock HL. The reaction mechanism of the Ideonella sakaiensis PETase enzyme. Commun Chem. 2024 Mar 27;7(1):65. PMID:38538850 doi:10.1038/s42004-024-01154-x
- ↑ Landrigan PJ, Stegeman JJ, Fleming LE, Allemand D, Anderson DM, Backer LC, Brucker-Davis F, Chevalier N, Corra L, Czerucka D, Bottein MD, Demeneix B, Depledge M, Deheyn DD, Dorman CJ, Fénichel P, Fisher S, Gaill F, Galgani F, Gaze WH, Giuliano L, Grandjean P, Hahn ME, Hamdoun A, Hess P, Judson B, Laborde A, McGlade J, Mu J, Mustapha A, Neira M, Noble RT, Pedrotti ML, Reddy C, Rocklöv J, Scharler UM, Shanmugam H, Taghian G, van de Water JAJM, Vezzulli L, Weihe P, Zeka A, Raps H, Rampal P. Human Health and Ocean Pollution. Ann Glob Health. 2020 Dec 3;86(1):151. PMID:33354517 doi:10.5334/aogh.2831
- ↑ Jambeck JR, Geyer R, Wilcox C, Siegler TR, Perryman M, Andrady A, Narayan R, Law KL. Marine pollution. Plastic waste inputs from land into the ocean. Science. 2015 Feb 13;347(6223):768-71. PMID:25678662 doi:10.1126/science.1260352
Student Contributors
Ashley Callaghan Rebecca Hoff Simone McCowan
