DNA polymerase 3D structures
From Proteopedia
(Difference between revisions)
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*DNA polymerase gamma | *DNA polymerase gamma | ||
- | **[[3ikm]] - hDpo | + | **[[3ikm]] - hDpo gamma1+gamma2 <br /> |
- | **[[8v5d]] - | + | **[[8v5d]] - hDpo gamma1 – Cryo EM<br /> |
- | **[[3ikl]], [[2g4c]] - hDpo | + | **[[3ikl]], [[2g4c]] - hDpo gamma2<br /> |
- | **[[2jw5]] - hDpo | + | **[[2jw5]] - hDpo gamma BRCT domain<br /> |
- | **[[1xsl]] - hDpo | + | **[[1xsl]] - hDpo gamma catalytic domain<br /> |
- | **[[1nzp]] - hDpo | + | **[[1nzp]] - hDpo gamma lyase domain - NMR<br /> |
- | **[[3pmn]], [[3pnc]], [[3mda]], [[2gws]], [[2bcq]], [[2bcr]], [[2bcs]], [[2bcu]], [[2bcv]], [[1xsp]], [[1rzt]] - hDpo | + | **[[3pmn]], [[3pnc]], [[3mda]], [[2gws]], [[2bcq]], [[2bcr]], [[2bcs]], [[2bcu]], [[2bcv]], [[1xsp]], [[1rzt]] - hDpo gamma + DNA<br /> |
- | **[[8g5i]], [[8g5j]], [[8g5l]], [[8g5m]], [[8g5n]], [[8g5o]], [[8g5s]], [[8t7e]], [[8udl]], [[8v54]], [[8v5r]] - hDpo | + | **[[8g5i]], [[8g5j]], [[8g5l]], [[8g5m]], [[8g5n]], [[8g5o]], [[8g5s]], [[8t7e]], [[8udl]], [[8v54]], [[8v5r]] - hDpo gamma1,2 + DNA – Cryo EM<br /> |
- | **[[8v55]] - hDpo | + | **[[8v55]] - hDpo gamma1 (mutant),2 + DNA – Cryo EM<br /> |
- | **[[3mgh]], [[3c5f]], [[3c5g]], [[2pfn]] - hDpo | + | **[[3mgh]], [[3c5f]], [[3c5g]], [[2pfn]] - hDpo gamma (mutant) + DNA<br /> |
- | **[[8g5p]] - hDpo | + | **[[8g5p]] - hDpo gamma1,2 + DNA + RNA – Cryo EM<br /> |
- | **[[3pml]], [[3mdc]], [[1xsn]], [[8udk]] - hDpo | + | **[[3pml]], [[3mdc]], [[1xsn]], [[8udk]] - hDpo gamma + DNA + nucleotide<br /> |
- | **[[5c53]], [[5c52]], [[5c51]] - hDpo | + | **[[5c53]], [[5c52]], [[5c51]] - hDpo gamma1 + DNA + nucleotide + pyrimidine derivative<br /> |
- | **[[4ztz]], [[4ztu]] - hDpo | + | **[[4ztz]], [[4ztu]] - hDpo gamma1,2 + DNA + nucleotide <br /> |
- | **[[8d33]], [[8d37]], [[8d3r]], [[8d42]], [[9ggf]] - hDpo | + | **[[8d33]], [[8d37]], [[8d3r]], [[8d42]], [[9ggf]] - hDpo gamma1,2 + DNA + nucleotide – Cryo EM<br /> |
- | **[[9ggb]], [[9ggc]], [[9ggd]], [[9gge]] - hDpo | + | **[[9ggb]], [[9ggc]], [[9ggd]], [[9gge]] - hDpo gamma1,2 (mutant) + DNA + nucleotide – Cryo EM<br /> |
- | **[[4k4g]], [[4k4h]], [[4k4i]] - hDpo | + | **[[4k4g]], [[4k4h]], [[4k4i]] - hDpo gamma + DNA + nucleotide analog<br /> |
- | **[[3mgi]], [[3hw8]], [[3hwt]], [[3hx0]], [[2pfo]], [[2pfp]], [[2pfq]] - hDpo | + | **[[3mgi]], [[3hw8]], [[3hwt]], [[3hx0]], [[2pfo]], [[2pfp]], [[2pfq]] - hDpo gamma (mutant) + DNA + nucleotide<br /> |
- | **[[8f69]] - mDpo | + | **[[8f69]] - mDpo gamma2 + DNA - mouse<br /> |
*DNA polymerase delta | *DNA polymerase delta | ||
- | **[[3e0j]] - hDpo | + | **[[3e0j]] - hDpo delta2+delta3<br /> |
**[[3upq]], [[3uq0]], [[3uq2]] - hDpo δ (mutant) + DNA<br /> | **[[3upq]], [[3uq0]], [[3uq2]] - hDpo δ (mutant) + DNA<br /> | ||
**[[4fo6]] - hDpo δ (mutant) + DNA + nucleotide analog<br /> | **[[4fo6]] - hDpo δ (mutant) + DNA + nucleotide analog<br /> | ||
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*DNA polymerase epsilon | *DNA polymerase epsilon | ||
- | **[[5vbn]] - hDpo | + | **[[5vbn]] - hDpo epsilon + subunits A+2 <br /> |
- | **[[9f6i]], [[9f6j]], [[9f6l]] - hDpo | + | **[[9f6i]], [[9f6j]], [[9f6l]] - hDpo epsilon subunit A + DNA – Cryo EM <br /> |
- | **[[9b8s]], [[9f6e]], [[9f6f]] - hDpo | + | **[[9b8s]], [[9f6e]], [[9f6f]] - hDpo epsilon subunit A + DNA + PCNA – Cryo EM <br /> |
- | **[[9b8t]] - hDpo | + | **[[9b8t]] - hDpo epsilon subunit A + DNA + PCNA + nucleotide – Cryo EM <br /> |
*DNA polymerase zeta | *DNA polymerase zeta | ||
- | **[[3abd]], [[3abe]] - hDpo | + | **[[3abd]], [[3abe]] - hDpo zeta catalytic subunit Rev3 + mitotic spindle assembly checkpoint protein Rev7<br /> |
- | **[[6ekm]], [[6bi7]], [[6bcd]], [[6bc8]] - hDpo | + | **[[6ekm]], [[6bi7]], [[6bcd]], [[6bc8]] - hDpo zeta catalytic subunit + MAD2B<br /> |
- | **[[3vu7]], [[4gk0]], [[6ws0]] - hDpo | + | **[[3vu7]], [[4gk0]], [[6ws0]] - hDpo zeta catalytic subunit + DNA repair protein Rev1 + MAD2B<br /> |
- | **[[6ws5]] - hDpo | + | **[[6ws5]] - hDpo zeta catalytic subunit + DNA repair protein Rev1 + MAD2B + inhibitor<br /> |
- | **[[4fjo]], [[4gk5]] - hDpo | + | **[[4fjo]], [[4gk5]] - hDpo kappa + hDpo zeta catalytic subunit + DNA repair protein Rev1 + MAD2B<br /> |
- | **[[6v8p]] - hDpo | + | **[[6v8p]] - hDpo zeta catalytic subunit + hDpo d subunits 3+small – Cryo EM<br /> |
- | **[[6v93]] - hDpo | + | **[[6v93]] - hDpo zeta catalytic+processivity subunits + hDpo delta subunits 3+small + DNA + dCTP – Cryo EM<br /> |
*DNA polymerase eta or DNA polymerase theta; domains: helicase 1-894; polymerase 1819-2590 | *DNA polymerase eta or DNA polymerase theta; domains: helicase 1-894; polymerase 1819-2590 | ||
- | **[[2i5o]] - hDpo | + | **[[2i5o]] - hDpo eta ubiquitin-binding zinc finger – NMR<br /> |
- | **[[3wup]] - hDpo | + | **[[3wup]] - hDpo eta ubiquitin-binding zinc finger <br /> |
**[[5a9j]] – hDpo helicase domain <br /> | **[[5a9j]] – hDpo helicase domain <br /> | ||
- | **[[9asj]], [[9ask]], [[9asl]], [[9bh6]], [[9bh7]] - hDpo | + | **[[9asj]], [[9ask]], [[9asl]], [[9bh6]], [[9bh7]] - hDpo eta - Cryo EM <br /> |
- | **[[9bp9]], [[9bpa]] - hDpo | + | **[[9bp9]], [[9bpa]] - hDpo eta + inhibitor - Cryo EM <br /> |
- | **[[8ski]], [[8w0a]], [[9bh8]], [[9bh9]], [[9bha]], [[9c5q]] - hDpo | + | **[[8ski]], [[8w0a]], [[9bh8]], [[9bh9]], [[9bha]], [[9c5q]] - hDpo eta helicase domain + DNA - Cryo EM <br /> |
- | **[[3tq1]], [[4j9k]], [[4j9l]], [[4j9m]], [[4j9n]], [[4j9o]], [[4j9p]], [[4j9q]], [[4j9r]], [[4j9s]], [[6mp3]], [[8eve]], [[8evf]] - hDpo | + | **[[3tq1]], [[4j9k]], [[4j9l]], [[4j9m]], [[4j9n]], [[4j9o]], [[4j9p]], [[4j9q]], [[4j9r]], [[4j9s]], [[6mp3]], [[8eve]], [[8evf]] - hDpo eta + DNA <br /> |
- | **[[3jaa]], [[3mr2]], [[3mr3]], [[3mr5]], [[3mr6]], [[3si8]], [[4dl2]], [[4dl3]], [[4dl4]], [[4dl5]], [[4dl6]], [[4dl7]], [[4eey]], [[4ecq]], [[4ecr]], [[4ecs]], [[4ect]], [[4ecu]], [[4ecv]], [[4ecw]], [[4ecx]], [[4ecy]], [[4ecz]], [[4ed0]], [[4ed1]], [[4ed2]], [[4ed3]], [[4ed6]], [[4ed7]], [[4ed8]], [[4o3n]], [[4o3o]], [[4o3p]], [[4o3q]], [[4o3r]], [[4o3s]], [[4q8e]], [[4q8f]], [[4rnm]], [[4rnn]], [[4rno]], [[4x0p]], [[4x0q]], [[5l9x]], [[5l1l]], [[5l1k]], [[5l1j]], [[5l1i]], [[5kg7]], [[5kg6]], [[5kg5]], [[5kg4]], [[5kg3]], [[5kg2]], [[5kg1]], [[5kg0]], [[5kfz]], [[5kfy]], [[5kfx]], [[5kfw]], [[5kfv]], [[5kfu]], [[5kft]], [[5kfs]], [[5kfr]], [[5kfq]], [[5kfp]], [[5kfo]], [[5kfn]], [[5kfm]], [[5kfl]], [[5kfk]], [[5kfj]], [[5kfi]], [[5kfh]], [[5kfg]], [[5kff]], [[5kfe]], [[5kfd]], [[5kfc]], [[5kfb]], [[5kfa]], [[5jum]], [[5f9n]], [[5f9l]], [[5ewg]], [[5ewf]], [[5ewe]], [[5dqi]], [[5dqh]], [[5dqg]], [[5dlg]], [[5dlf]], [[5dgb]], [[5dga]], [[5dg9]], [[5dg8]], [[5dg7]], [[4yr3]], [[4yr2]], [[4yr0]], [[4yqw]], [[4yp3]], [[4ru9]], [[6mxo]], [[6m7v]], [[6m7u]], [[6m7t]], [[6m7p]], [[6m7o]], [[6d0z]], [[6d0m]], [[6mq8]], [[6pl7]], [[6pl8]], [[6plc]], [[6ui2]], [[6uqi]], [[6v5k]], [[6w5x]], [[6wk6]], [[7l69]], [[7lcd]], [[7m7l]], [[7m7m]], [[7m7n]], [[7m7o]], [[7m7p]], [[7m7q]], [[7m7r]], [[7m7s]], [[7m7t]], [[7m7u]], [[7m7y]], [[7m7z]], [[7m80]], [[7m81]], [[7m82]], [[7m83]], [[7m84]], [[7m85]], [[7m86]], [[7m87]], [[7m88]], [[7m89]], [[7m8a]], [[7m8b]], [[7m8c]], [[7m8d]], [[7u72]], [[7u73]], [[7u74]], [[7u75]], [[7u76]], [[7u77]], [[7u78]], [[7u79]], [[7u7a]], [[7u7b]], [[7u7c]], [[7u7d]], [[7u7e]], [[7u7g]], [[7u7f]], [[7u7i]], [[7u7j]], [[7u7k]], [[7u7l]], [[7u7r]], [[7u7s]], [[7u7t]], [[7u7u]], [[7u7v]], [[7u7w]], [[7u7x]], [[7u7y]], [[7u7z]], [[7u80]], [[7u81]], [[7u82]], [[7u83]], [[7u84]], [[8e85]], [[8e86]], [[8e87]], [[8e88]], [[8e89]], [[8e8a]], [[8e8c]], [[8e8d]], [[8e8e]], [[8e8f]], [[8e8g]], [[8e8h]], [[8e8j]], [[8e8k]], [[8fn3]], [[8fog]], [[8foh]], [[8foj]], [[8g8h]], [[8g8j]], [[8gbf]], [[8gkr]], [[8gml]], [[8ujt]], [[8ujv]], [[8ujx]], [[8uk4]], [[8v7a]], [[8v7b]], [[8v7c]], [[8v7d]], [[8v7e]], [[8v7f]], [[8v7g]], [[8v7h]], [[8v7j]], [[8v7k]], [[8v7i]], [[9chw]], [[9ci9]], [[9cih]], [[9ciq]] - hDpo | + | **[[3jaa]], [[3mr2]], [[3mr3]], [[3mr5]], [[3mr6]], [[3si8]], [[4dl2]], [[4dl3]], [[4dl4]], [[4dl5]], [[4dl6]], [[4dl7]], [[4eey]], [[4ecq]], [[4ecr]], [[4ecs]], [[4ect]], [[4ecu]], [[4ecv]], [[4ecw]], [[4ecx]], [[4ecy]], [[4ecz]], [[4ed0]], [[4ed1]], [[4ed2]], [[4ed3]], [[4ed6]], [[4ed7]], [[4ed8]], [[4o3n]], [[4o3o]], [[4o3p]], [[4o3q]], [[4o3r]], [[4o3s]], [[4q8e]], [[4q8f]], [[4rnm]], [[4rnn]], [[4rno]], [[4x0p]], [[4x0q]], [[5l9x]], [[5l1l]], [[5l1k]], [[5l1j]], [[5l1i]], [[5kg7]], [[5kg6]], [[5kg5]], [[5kg4]], [[5kg3]], [[5kg2]], [[5kg1]], [[5kg0]], [[5kfz]], [[5kfy]], [[5kfx]], [[5kfw]], [[5kfv]], [[5kfu]], [[5kft]], [[5kfs]], [[5kfr]], [[5kfq]], [[5kfp]], [[5kfo]], [[5kfn]], [[5kfm]], [[5kfl]], [[5kfk]], [[5kfj]], [[5kfi]], [[5kfh]], [[5kfg]], [[5kff]], [[5kfe]], [[5kfd]], [[5kfc]], [[5kfb]], [[5kfa]], [[5jum]], [[5f9n]], [[5f9l]], [[5ewg]], [[5ewf]], [[5ewe]], [[5dqi]], [[5dqh]], [[5dqg]], [[5dlg]], [[5dlf]], [[5dgb]], [[5dga]], [[5dg9]], [[5dg8]], [[5dg7]], [[4yr3]], [[4yr2]], [[4yr0]], [[4yqw]], [[4yp3]], [[4ru9]], [[6mxo]], [[6m7v]], [[6m7u]], [[6m7t]], [[6m7p]], [[6m7o]], [[6d0z]], [[6d0m]], [[6mq8]], [[6pl7]], [[6pl8]], [[6plc]], [[6ui2]], [[6uqi]], [[6v5k]], [[6w5x]], [[6wk6]], [[7l69]], [[7lcd]], [[7m7l]], [[7m7m]], [[7m7n]], [[7m7o]], [[7m7p]], [[7m7q]], [[7m7r]], [[7m7s]], [[7m7t]], [[7m7u]], [[7m7y]], [[7m7z]], [[7m80]], [[7m81]], [[7m82]], [[7m83]], [[7m84]], [[7m85]], [[7m86]], [[7m87]], [[7m88]], [[7m89]], [[7m8a]], [[7m8b]], [[7m8c]], [[7m8d]], [[7u72]], [[7u73]], [[7u74]], [[7u75]], [[7u76]], [[7u77]], [[7u78]], [[7u79]], [[7u7a]], [[7u7b]], [[7u7c]], [[7u7d]], [[7u7e]], [[7u7g]], [[7u7f]], [[7u7i]], [[7u7j]], [[7u7k]], [[7u7l]], [[7u7r]], [[7u7s]], [[7u7t]], [[7u7u]], [[7u7v]], [[7u7w]], [[7u7x]], [[7u7y]], [[7u7z]], [[7u80]], [[7u81]], [[7u82]], [[7u83]], [[7u84]], [[8e85]], [[8e86]], [[8e87]], [[8e88]], [[8e89]], [[8e8a]], [[8e8c]], [[8e8d]], [[8e8e]], [[8e8f]], [[8e8g]], [[8e8h]], [[8e8j]], [[8e8k]], [[8fn3]], [[8fog]], [[8foh]], [[8foj]], [[8g8h]], [[8g8j]], [[8gbf]], [[8gkr]], [[8gml]], [[8ujt]], [[8ujv]], [[8ujx]], [[8uk4]], [[8v7a]], [[8v7b]], [[8v7c]], [[8v7d]], [[8v7e]], [[8v7f]], [[8v7g]], [[8v7h]], [[8v7j]], [[8v7k]], [[8v7i]], [[9chw]], [[9ci9]], [[9cih]], [[9ciq]] - hDpo eta + DNA + nucleotide<br /> |
- | **[[9au5]], [[9au8]], [[9au9]] - hDpo | + | **[[9au5]], [[9au8]], [[9au9]] - hDpo eta + DNA + nucleotide – Cryo EM<br /> |
- | **[[6pz3]], [[6q02]] - hDpo | + | **[[6pz3]], [[6q02]] - hDpo eta (mutant) + DNA + nucleotide<br /> |
- | **[[6xbu]], [[7zus]] – hDpo polymerase domain + nucleotide + DNA<br /> | + | **[[6xbu]], [[7zus]] – hDpo eta polymerase domain + nucleotide + DNA<br /> |
- | **[[5a9f]], [[5aga]] - hDpo | + | **[[5a9f]], [[5aga]] - hDpo eta + nucleotide<br /> |
**[[7zx0]], [[7zx1]], [[8e23]], [[8e24]] , [[8gd7]]– hDpo polymerase domain + inhibitor + DNA<br /> | **[[7zx0]], [[7zx1]], [[8e23]], [[8e24]] , [[8gd7]]– hDpo polymerase domain + inhibitor + DNA<br /> | ||
- | **[[8ef9]], [[8efc]], [[8efk]] – Dpo polymerase domain + nucleotide + DNA – Lates calcarifer<br /> | + | **[[8ef9]], [[8efc]], [[8efk]] – Dpo eta polymerase domain + nucleotide + DNA – Lates calcarifer<br /> |
*DNA polymerase iota | *DNA polymerase iota |
Revision as of 07:36, 27 April 2025
3D Structures of DNA polymerase
Updated on 27-April-2025
6ctq, 6ctp, 6cto, 6ctn, 6ctm, 6ctl, 6ctk, 6ctj, 6cti, 6crh, 6crc, 6crb, 6cr9, 6cr8, 6cr7, 6cr6, 6cr5, 6cr4, 6cr3, 6cpq, 6cly, 6bem, 6bel, 6ph6, 6u2o, 6u6b, 6uok, 6uol, 6uom, 6w2m, 7k96 - hDpo beta + DNA + nucleotide analog
catalytic+2+3+4 + PCNA + DNA + nucleotide analog – Cryo EM
Terminal deoxynucleotidyl transferase binary complex