9v6b
From Proteopedia
(Difference between revisions)
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| - | '''Unreleased structure''' | ||
| - | + | ==Neutron crystal structure of the oxidized form of b5R at pD 6.5== | |
| + | <StructureSection load='9v6b' size='340' side='right'caption='[[9v6b]], [[Resolution|resolution]] 1.60Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[9v6b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sus_scrofa Sus scrofa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9V6B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9V6B FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Neutron Diffraction, [[Resolution|Resolution]] 1.6Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9v6b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9v6b OCA], [https://pdbe.org/9v6b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9v6b RCSB], [https://www.ebi.ac.uk/pdbsum/9v6b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9v6b ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/NB5R3_PIG NB5R3_PIG] Desaturation and elongation of fatty acids, cholesterol biosynthesis, drug metabolism, and, in erythrocyte, methemoglobin reduction.[:] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Many structural studies have been reported for ferredoxin:NADP(+) reductase family members, but an experimental validation of the catalytic hydride and proton transfer steps through a direct detection of the involved hydrogen atoms has not been achieved so far. Here, we determined high-resolution X-ray and neutron crystal structures of NADH-cytochrome b(5) reductase, which acts as an electron supplier for various metabolic processes and mediates hydride and proton transfer reactions via its FAD and NADH cofactors. The X-ray structures identify the FADH(-)-NAD(+) and FAD-NADH complexes based on the electron densities of the hydrogen atoms bound to the cofactors. The neutron structures determined at different pD-values show a difference in the protonation state of the histidine residue in the hydrogen-bond network from FAD to the protein surface. The observation of the hydrogen atoms reveals the structural basis for the hydride and proton transfer reactions catalyzed by NADH-cytochrome b(5) reductase. | ||
| - | + | Structural basis of hydride and proton transfer reactions revealed by the detection of hydrogen atoms in mammalian NADH-cytochrome b(5) reductase.,Hirano Y, Kurihara K, Kusaka K, Ostermann A, Hikita M, Kimura S, Miki K, Tamada T Structure. 2025 Oct 30:S0969-2126(25)00393-4. doi: 10.1016/j.str.2025.10.006. PMID:41172987<ref>PMID:41172987</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| - | [[Category: | + | <div class="pdbe-citations 9v6b" style="background-color:#fffaf0;"></div> |
| - | [[Category: Hikita | + | == References == |
| - | [[Category: | + | <references/> |
| - | [[Category: Kimura | + | __TOC__ |
| - | [[Category: | + | </StructureSection> |
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: | + | [[Category: Sus scrofa]] |
| - | [[Category: | + | [[Category: Hikita M]] |
| + | [[Category: Hirano Y]] | ||
| + | [[Category: Kimura S]] | ||
| + | [[Category: Kurihara K]] | ||
| + | [[Category: Kusaka K]] | ||
| + | [[Category: Miki K]] | ||
| + | [[Category: Ostermann A]] | ||
| + | [[Category: Tamada T]] | ||
Current revision
Neutron crystal structure of the oxidized form of b5R at pD 6.5
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Categories: Large Structures | Sus scrofa | Hikita M | Hirano Y | Kimura S | Kurihara K | Kusaka K | Miki K | Ostermann A | Tamada T
