9v6b

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Current revision (07:53, 19 November 2025) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 9v6b is ON HOLD until Paper Publication
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==Neutron crystal structure of the oxidized form of b5R at pD 6.5==
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<StructureSection load='9v6b' size='340' side='right'caption='[[9v6b]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[9v6b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sus_scrofa Sus scrofa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9V6B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9V6B FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Neutron Diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9v6b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9v6b OCA], [https://pdbe.org/9v6b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9v6b RCSB], [https://www.ebi.ac.uk/pdbsum/9v6b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9v6b ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/NB5R3_PIG NB5R3_PIG] Desaturation and elongation of fatty acids, cholesterol biosynthesis, drug metabolism, and, in erythrocyte, methemoglobin reduction.[:]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Many structural studies have been reported for ferredoxin:NADP(+) reductase family members, but an experimental validation of the catalytic hydride and proton transfer steps through a direct detection of the involved hydrogen atoms has not been achieved so far. Here, we determined high-resolution X-ray and neutron crystal structures of NADH-cytochrome b(5) reductase, which acts as an electron supplier for various metabolic processes and mediates hydride and proton transfer reactions via its FAD and NADH cofactors. The X-ray structures identify the FADH(-)-NAD(+) and FAD-NADH complexes based on the electron densities of the hydrogen atoms bound to the cofactors. The neutron structures determined at different pD-values show a difference in the protonation state of the histidine residue in the hydrogen-bond network from FAD to the protein surface. The observation of the hydrogen atoms reveals the structural basis for the hydride and proton transfer reactions catalyzed by NADH-cytochrome b(5) reductase.
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Authors: Hirano, Y., Kurihara, K., Kusaka, K., Ostermann, A., Hikita, M., Kimura, S., Miki, K., Tamada, T.
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Structural basis of hydride and proton transfer reactions revealed by the detection of hydrogen atoms in mammalian NADH-cytochrome b(5) reductase.,Hirano Y, Kurihara K, Kusaka K, Ostermann A, Hikita M, Kimura S, Miki K, Tamada T Structure. 2025 Oct 30:S0969-2126(25)00393-4. doi: 10.1016/j.str.2025.10.006. PMID:41172987<ref>PMID:41172987</ref>
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Description: Neutron crystal structure of the oxidized form of b5R at pD 6.5
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Kurihara, K]]
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<div class="pdbe-citations 9v6b" style="background-color:#fffaf0;"></div>
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[[Category: Hikita, M]]
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== References ==
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[[Category: Miki, K]]
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<references/>
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[[Category: Kimura, S]]
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__TOC__
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[[Category: Hirano, Y]]
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</StructureSection>
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[[Category: Ostermann, A]]
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[[Category: Large Structures]]
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[[Category: Tamada, T]]
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[[Category: Sus scrofa]]
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[[Category: Kusaka, K]]
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[[Category: Hikita M]]
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[[Category: Hirano Y]]
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[[Category: Kimura S]]
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[[Category: Kurihara K]]
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[[Category: Kusaka K]]
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[[Category: Miki K]]
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[[Category: Ostermann A]]
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[[Category: Tamada T]]

Current revision

Neutron crystal structure of the oxidized form of b5R at pD 6.5

PDB ID 9v6b

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