9pnt

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Current revision (08:18, 11 December 2025) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 9pnt is ON HOLD until Paper Publication
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==N4 vRNAP gp50 - open complex==
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<StructureSection load='9pnt' size='340' side='right'caption='[[9pnt]], [[Resolution|resolution]] 4.30&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[9pnt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_phage_N4 Escherichia phage N4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9PNT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9PNT FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 4.3&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9pnt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9pnt OCA], [https://pdbe.org/9pnt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9pnt RCSB], [https://www.ebi.ac.uk/pdbsum/9pnt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9pnt ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/RPOLV_BPN4 RPOLV_BPN4] DNA-dependent RNA polymerase, which is injected into the host upon infection and transcribes the phage early genes from promoters that have a 5-bp stem-3 nt loop hairpin structure.<ref>PMID:18362338</ref> <ref>PMID:19061645</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Schitoviruses are widespread prokaryotic viruses that encapsidate a giant (~3,500-residue) virion-associated RNA polymerase (vRNAP). During infection, vRNAP is expelled into Gram-negative bacteria, along with two additional ejection proteins, to assemble a transient DNA-ejectosome that becomes transcriptionally active, initiating viral replication. Here, we present an integrative structural analysis of the coliphage N4 vRNAP (gp50). We find that this 383 kDa enzyme is a multi-domain, single-chain RNA polymerase, structurally distinct from both compact single-chain RNAPs and large multi-subunit holoenzymes. vRNAP is composed of loosely connected domains and exhibits an intramolecular mode of allosteric regulation through its C-terminal domain. Comparative analysis of intact and genome-released virions identified gp51, which forms an outer-membrane complex, and gp52, which assembles a periplasmic tunnel. These proteins generate heterogeneous pores that facilitate the release of vRNAP. We further uncover a signaling hub in the phage tail, composed of the receptor-binding protein, tail tube, and tail plug, that detects receptor engagement and orchestrates the release of ejection proteins. We propose that the beads-on-a-string architecture of vRNAP enables the translocation of megadalton-scale protein complexes through the ~35 A channel formed by the tail and ejection proteins. These findings establish N4 as a distinctive model for protein translocation through biological channels.
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Authors:
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Structure of the giant RNA polymerase ejected from coliphage N4.,Bellis NF, Lokareddy RK, Pavlenok M, Horton SLC, Kizziah JL, Forti F, Schneider DA, Niederweis M, Briani F, Cingolani G Res Sq [Preprint]. 2025 Oct 21:rs.3.rs-7746245. doi: 10.21203/rs.3.rs-7746245/v1. PMID:41282253<ref>PMID:41282253</ref>
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Description:
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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<div class="pdbe-citations 9pnt" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Escherichia phage N4]]
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[[Category: Large Structures]]
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[[Category: Bellis NF]]
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[[Category: Cingolani G]]
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[[Category: Lokareddy RK]]

Current revision

N4 vRNAP gp50 - open complex

PDB ID 9pnt

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