We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

1whs

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
[[Image:1whs.jpg|left|200px]]
+
{{Seed}}
 +
[[Image:1whs.png|left|200px]]
<!--
<!--
Line 9: Line 10:
{{STRUCTURE_1whs| PDB=1whs | SCENE= }}
{{STRUCTURE_1whs| PDB=1whs | SCENE= }}
-
'''STRUCTURE OF THE COMPLEX OF L-BENZYLSUCCINATE WITH WHEAT SERINE CARBOXYPEPTIDASE II AT 2.0 ANGSTROMS RESOLUTION'''
+
===STRUCTURE OF THE COMPLEX OF L-BENZYLSUCCINATE WITH WHEAT SERINE CARBOXYPEPTIDASE II AT 2.0 ANGSTROMS RESOLUTION===
-
==Overview==
+
<!--
-
The structure of the complex of L-benzylsuccinate (Ki = 0.2 mM) bound to wheat serine carboxypeptidase II has been analyzed at 2.0-A resolution for native and inhibited crystals at -170 degrees C. The model has been refined and has a standard crystallographic R-factor of 0.176 for 57,734 reflections observed between 20.0- and 2.0-A resolution. The root mean square deviation from ideal bonds is 0.017 A and from ideal angles is 2.6 degrees. The model consists of 400 amino acids, 4 N-linked saccharide residues, and 430 water molecules. L-Benzylsuccinate occupies a narrow slot in the active site defined by Tyr 60, Tyr 239, and the polypeptide backbone. One carboxylate forms hydrogen bonds to Glu 145, Asn 51, the amide of Gly 52, and the catalytic His 397, suggestive of how the peptide C-terminal carboxylate is recognized by the enzyme. The phenyl ring stacks between Tyr 239 and Tyr 60, while the other carboxylate occupies the "oxyanion hole". One of the oxygens accepts hydrogen bonds from the amides of Tyr 147 and Gly 53, while the other forms a very close contact (2.3 A) with the O gamma of Ser 146, forcing the side chain into a conformation alternative to that found in the resting state of the enzyme. The inhibitor occupies the active site in a way that suggests that it can be regarded as a transition-state analogue of serine carboxypeptidases. The model suggests a novel enzymatic mechanism, involving substrate-assisted catalysis, that might account for the low pH optimum (4.0-5.5) of peptidase activity unique to this family of serine proteinases.
+
The line below this paragraph, {{ABSTRACT_PUBMED_7727364}}, adds the Publication Abstract to the page
 +
(as it appears on PubMed at http://www.pubmed.gov), where 7727364 is the PubMed ID number.
 +
-->
 +
{{ABSTRACT_PUBMED_7727364}}
==About this Structure==
==About this Structure==
Line 25: Line 29:
[[Category: Remington, S J.]]
[[Category: Remington, S J.]]
[[Category: Serine carboxypeptidase]]
[[Category: Serine carboxypeptidase]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 13:41:25 2008''
+
 
 +
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 16:21:00 2008''

Revision as of 13:21, 29 July 2008

Image:1whs.png

Template:STRUCTURE 1whs

STRUCTURE OF THE COMPLEX OF L-BENZYLSUCCINATE WITH WHEAT SERINE CARBOXYPEPTIDASE II AT 2.0 ANGSTROMS RESOLUTION

Template:ABSTRACT PUBMED 7727364

About this Structure

1WHS is a Single protein structure. Full crystallographic information is available from OCA.

Reference

Structure of the complex of L-benzylsuccinate with wheat serine carboxypeptidase II at 2.0-A resolution., Bullock TL, Branchaud B, Remington SJ, Biochemistry. 1994 Sep 20;33(37):11127-34. PMID:7727364

Page seeded by OCA on Tue Jul 29 16:21:00 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1whs"
Personal tools