Sandbox Home

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 4: Line 4:
<tr>
<tr>
<td colspan="3" style="background:#F5F5FC; border:1px solid #ddd;">
<td colspan="3" style="background:#F5F5FC; border:1px solid #ddd;">
-
<div style="position:relative; top:0.2em; font-size:1.2em; padding:5px 5px 5px 10px; text-align:right; display:block;">
+
<!-- ISSN aligned right (no float, so sidebar isn't pushed down) -->
-
<b><i>ISSN 2310-6301</i></b>
+
<div style="text-align:right; font-size:1.2em; padding:5px 10px 5px 10px;">
-
</div>
+
<b><i>ISSN 2310-6301</i></b>
 +
</div>
<span style="display:block; margin:0; padding:0.3em; color:#000; font-style:italic; font-size:1.4em;">
<span style="display:block; margin:0; padding:0.3em; color:#000; font-style:italic; font-size:1.4em;">
Line 15: Line 16:
<b>Proteopedia</b> presents this information in a user-friendly way as a <b>collaborative &amp; free 3D-encyclopedia of proteins &amp; other biomolecules.</b>
<b>Proteopedia</b> presents this information in a user-friendly way as a <b>collaborative &amp; free 3D-encyclopedia of proteins &amp; other biomolecules.</b>
</span>
</span>
- 
-
<div style="clear:both;"></div>
 
</td>
</td>
</tr>
</tr>
Line 27: Line 26:
</tr>
</tr>
-
<!-- SINGLE CONTENT ROW WITH LINKS AT TOP -->
+
<!-- MAIN CONTENT ROW -->
<tr style="vertical-align:top; text-align:center;">
<tr style="vertical-align:top; text-align:center;">
<!-- LEFT COLUMN -->
<!-- LEFT COLUMN -->

Revision as of 16:15, 30 September 2025

       ISSN 2310-6301
     
       As life is more than 2D, Proteopedia helps to bridge the gap between 3D structure & function of biomacromolecules
     
     
       Proteopedia presents this information in a user-friendly way as a collaborative & free 3D-encyclopedia of proteins & other biomolecules.
     
Selected Research Pages In Journals Education
About this image
Metal-Ligand Nano-Cages

This self-assembling structure has an interior cavity about 32 Å in diameter. It consists of 24 palladium ions, each of which is coordinated by 4 nitrogens, which are part of 48 dipyridylthiophene molecules. Such synthetic nano-spheres can be functionalized to create synthetic receptors and nanoreactors. Potential applications in sensing, catalysis, and drug delivery are being explored.

>>> See more animations and explanation >>>

About this image
Geobacter nanowire structure surprise.

F Wang, Y Gu, JP O'Brien, SM Yi, SE Yalcin, V Srikanth, C Shen, D Vu, NL Ing, AI Hochbaum, EH Egelman, NS Malvankar. Cell 2019 doi: 10.1016/j.cell.2019.03.029
Bacteria living in anaerobic environments (no oxygen) need alternative electron acceptors in order to get energy from their food. An acceptor abundant in the earth's crust is red iron oxide ("rust"), which gets reduced to black iron oxide (magnetite). Many bacteria, such as Geobacter, get their metabolic energy by transferring electrons to acceptors that are multiple cell diameters distant, using protein nanowires. These were long thought to be pili. But when the structure of the nanowires was solved in 2019, to everyone's surprise, they turned out to be unprecedented linear polymers of multi-heme cytochromes. The hemes form an electrically conductive chain in the cores of these nanowires.

>>> Visit I3DC Interactive Visualizations >>>

About this image
Make Your Own Electrostatic Potential Maps

Positive (+) and Negative (-) charges on the surface of a protein molecule play crucial roles in its interactions with other molecules, and hence in its functions. Electrostatic potential maps coloring the surface of a protein molecule are a popular way to visualize the distribution of surface charges. Easy to use free software is available to to create these surface maps. Above is an integral membrane potassium channel protein. One of its 4 identical chains is removed so you can see the Negative (-) protein surface contacting the 3 K+ ions.

>>> See Examples and Get Instructions >>>

About Contact Hot News Table of Contents Structure Index Help
Personal tools