Sandbox Home

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
<table id="tableColumnsMainPage" style="width:100%; border:2px solid #ddd; border-collapse:collapse; table-layout:fixed;">
+
<table id="tableColumnsMainPage" style="width:100%;border:2px solid #ddd;border-collapse: collapse;table-layout: fixed; ">
 +
<tr><td colspan='3' style="background:#F5F5FC;border:1px solid #ddd;">
 +
<div style="top:+0.2em; font-size:1.2em; padding:5px 5px 5px 10px; float:right;">'''''ISSN 2310-6301'''''</div>
-
<!-- HEADER -->
+
<span style="border:none; margin:0; padding:0.3em; color:#000; font-style: italic; font-size: 1.4em;">
-
<tr>
+
<b>As life is more than 2D</b>, Proteopedia helps to bridge the gap between 3D structure & function of biomacromolecules
-
<td colspan="3" style="background:#F5F5FC; border:1px solid #ddd;">
+
</span>
-
<!-- ISSN aligned right (no float, so sidebar isn't pushed down) -->
+
-
<div style="text-align:right; font-size:1.2em; padding:5px 10px 5px 10px;">
+
-
<b><i>ISSN 2310-6301</i></b>
+
-
</div>
+
-
<span style="display:block; margin:0; padding:0.3em; color:#000; font-style:italic; font-size:1.4em;">
+
<span style="border:none; margin:0; padding:0.3em; color:#000; font-style: italic; font-size: 1.1em;max-width:80%;display:block;">
-
<b>As life is more than 2D</b>, Proteopedia helps to bridge the gap between 3D structure &amp; function of biomacromolecules
+
<b>Proteopedia</b> presents this information in a user-friendly way as a '''collaborative & free 3D-encyclopedia of proteins & other biomolecules.'''
-
</span>
+
</span>
-
<span style="display:block; margin:0; padding:0.3em; color:#000; font-style:italic; font-size:1.1em; max-width:80%;">
 
-
<b>Proteopedia</b> presents this information in a user-friendly way as a <b>collaborative &amp; free 3D-encyclopedia of proteins &amp; other biomolecules.</b>
 
-
</span>
 
-
</td>
 
-
</tr>
 
-
<!-- COLUMN HEADERS -->
+
</td></tr>
-
<tr>
+
-
<th style="padding:10px; background-color:#33ff7b;">Selected Research Pages</th>
+
-
<th style="padding:10px; background-color:#f1b840;">In Journals</th>
+
-
<th style="padding:10px; background-color:#79baff;">Education</th>
+
-
</tr>
+
-
<!-- MAIN CONTENT ROW -->
+
<tr>
-
<tr style="vertical-align:top; text-align:center;">
+
<th style="padding: 10px;background-color: #33ff7b">Selected Research Pages</th>
-
<!-- LEFT COLUMN -->
+
<th style="padding: 10px;background-color: #f1b840">In Journals</th>
-
<td style="padding:10px; vertical-align:top;">
+
<th style="padding: 10px;background-color: #79baff">Education</th>
-
<!-- Links -->
+
</tr>
-
<div>
+
-
<p>[[Help:Contents#For_authors:_contributing_content|How to add content to Proteopedia]]</p>
+
-
<p>[[Proteopedia:Video_Guide|Video Guides]]</p>
+
-
<p>[[Who knows]] ...</p>
+
-
</div>
+
-
<!-- Featured -->
+
-
<div style="margin-top:10px;">
+
-
{{Proteopedia:Featured SEL/{{#expr: {{#time:U}} mod {{Proteopedia:Number of SEL articles}}}}}}
+
-
</div>
+
-
</td>
+
-
<!-- MIDDLE COLUMN -->
+
<tr valign='top'>
-
<td style="padding:10px; vertical-align:top;">
+
<td style="padding: 5px;"> {{Proteopedia:Featured SEL/{{#expr: {{#time:U}} mod {{Proteopedia:Number of SEL articles}}}}}}</td>
-
<div>
+
<td style="padding: 5px;"> {{Proteopedia:Featured JRN/{{#expr: {{#time:U}} mod {{Proteopedia:Number of JRN articles}}}}}}</td>
-
<p>[[I3DC|About Interactive 3D Complements - '''I3DCs''']]</p>
+
<td style="padding: 5px;"> {{Proteopedia:Featured EDU/{{#expr: {{#time:U}} mod {{Proteopedia:Number of EDU articles}}}}}}</td>
-
<p>[[Proteopedia:I3DC|List of I3DCs]]</p>
+
</tr>
-
<p>[[How to get an I3DC for your paper]]</p>
+
-
</div>
+
-
<div style="margin-top:10px;">
+
-
{{Proteopedia:Featured JRN/{{#expr: {{#time:U}} mod {{Proteopedia:Number of JRN articles}}}}}}
+
-
</div>
+
-
</td>
+
-
<!-- RIGHT COLUMN -->
+
<tr style="font-size: 1.2em; text-align: center;">
-
<td style="padding:10px; vertical-align:top;">
+
<td style="padding: 10px;background-color: #33ff7b"></td>
-
<div>
+
<td style="padding: 10px;background-color: #f1b840"></td>
-
<p>[[Teaching strategies using Proteopedia]]</p>
+
<td style="padding: 10px;background-color: #79baff"></td>
-
<p>[[Teaching_Scenes%2C_Tutorials%2C_and_Educators%27_Pages|Examples of pages for teaching]]</p>
+
</tr>
-
<p>[[Help:Contents#For_authors:_contributing_content|How to add content to Proteopedia]]</p>
+
-
</div>
+
-
<div style="margin-top:10px;">
+
-
{{Proteopedia:Featured EDU/{{#expr: {{#time:U}} mod {{Proteopedia:Number of EDU articles}}}}}}
+
-
</div>
+
-
</td>
+
-
</tr>
+
-
<!-- BOTTOM NAV BAR -->
+
 
-
<tr>
+
<tr style="font-size: 1.0em; text-align: center;">
-
<td colspan="3">
+
 
-
<table width="100%" style="padding:10px; background-color:#d7d8f9; font-size:1.5em;">
+
<td style="padding: 10px;>
-
<tr>
+
<p>[[Help:Contents#For_authors:_contributing_content|How to add content to Proteopedia]]</p>
-
<td>[[Proteopedia:About|About]]</td>
+
<p>[[Proteopedia:Video_Guide|Video Guides]]</p>
-
<td>[[Special:Contact|Contact]]</td>
+
<p>[[Who knows]] ...</p>
-
<td>[[Template:MainPageNews|Hot News]]</td>
+
</td>
-
<td>[[Proteopedia:Table of Contents|Table of Contents]]</td>
+
 
-
<td>[[Proteopedia:Structure Index|Structure Index]]</td>
+
<td style="padding: 10px;>
-
<td>[[Help:Contents|Help]]</td>
+
<p>[[I3DC|About Interactive 3D Complements - '''I3DCs''']]</p>
-
</tr>
+
<p>[[Proteopedia:I3DC|List of I3DCs]]</p>
-
</table>
+
<p>[[How to get an I3DC for your paper]]</p>
-
</td>
+
 
-
</tr>
+
</td>
 +
 
 +
<td style="padding: 10px;>
 +
<p>[[Teaching strategies using Proteopedia]]</p>
 +
<p>[[Teaching_Scenes%2C_Tutorials%2C_and_Educators%27_Pages|Examples of pages for teaching]]</p>
 +
<p>[[Help:Contents#For_authors:_contributing_content|How to add content to Proteopedia]]</p>
 +
</td>
 +
 
 +
</tr>
 +
 
 +
<tr><td colspan='3' >
 +
<table width='100%' style="padding: 10px; background-color: #d7d8f9; font-size: 1.5em;"><tr>
 +
<td>[[Proteopedia:About|About]]</td>
 +
<td>[[Special:Contact|Contact]]</td>
 +
<td>[[Template:MainPageNews|Hot News]]</td>
 +
<td>[[Proteopedia:Table of Contents|Table of Contents]]</td>
 +
<td>[[Proteopedia:Structure Index|Structure Index]]</td>
 +
<td>[[Help:Contents|Help]]</td>
 +
</tr></table>
 +
</td></tr>
</table>
</table>

Revision as of 16:31, 30 September 2025

ISSN 2310-6301

As life is more than 2D, Proteopedia helps to bridge the gap between 3D structure & function of biomacromolecules

Proteopedia presents this information in a user-friendly way as a collaborative & free 3D-encyclopedia of proteins & other biomolecules.


Selected Research Pages In Journals Education
About this image
Green Fluorescent Protein

by Eran Hodis
Green fluorescent protein (GFP) is a bioluminescent polypeptide isolated from the jellyfish Aequorea victoria. GFP converts the blue chemiluminescence of aequorin into green fluorescent light. In the laboratory, GFP can be incorporated into a variety of biological systems in order to function as a marker protein. Since its discovery in 1962, GFP has become a significant contributor to the research of monitoring gene expression, localization, mobility, traffic, or interactions between various membrane and cytoplasmic proteins.

>>> Visit this page >>>

About this image
Interconversion of the specificities of human lysosomal enzymes associated with Fabry and Schindler diseases.

IB Tomasic, MC Metcalf, AI Guce, NE Clark, SC Garman. J. Biol. Chem. 2010 doi: 10.1074/jbc.M110.118588
The human lysosomal enzymes α-galactosidase and α-N-acetylgalactosaminidase share 46% amino acid sequence identity and have similar folds. Using a rational protein engineering approach, we interconverted the enzymatic specificity of α-GAL and α-NAGAL. The engineered α-GAL retains the antigenicity but has acquired the enzymatic specificity of α-NAGAL. Conversely, the engineered α-NAGAL retains the antigenicity but has acquired the enzymatic specificity of the α-GAL enzyme. Comparison of the crystal structures of the designed enzyme to the wild-type enzymes shows that active sites superimpose well, indicating success of the rational design. The designed enzymes might be useful as non-immunogenic alternatives in enzyme replacement therapy for treatment of lysosomal storage disorders such as Fabry disease.

>>> Visit this I3DC complement >>>

About this image
Transport of Drugs & Nutrients

Above is a transmembrane protein that takes up, into your intestinal cells, orally consumed peptide nutrients and drugs. Its lumen-face (shown above) opens and binds peptide or drug, then closes, while its cytoplasmic face (opposite end from the above) opens to release its cargo into the intestinal cell, which passes it on into the blood circulation.

>>> See more animations and explanation >>>

How to add content to Proteopedia

Video Guides

Who knows ...

About Interactive 3D Complements - I3DCs

List of I3DCs

How to get an I3DC for your paper

Teaching strategies using Proteopedia

Examples of pages for teaching

How to add content to Proteopedia

About Contact Hot News Table of Contents Structure Index Help
Personal tools