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9yq5

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m (Protected "9yq5" [edit=sysop:move=sysop])
Current revision (08:29, 11 December 2025) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 9yq5 is ON HOLD
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==Chlorella virus hyaluronan synthase bound to an inserted UDP-GlcA==
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<StructureSection load='9yq5' size='340' side='right'caption='[[9yq5]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[9yq5]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Lama_glama Lama glama] and [https://en.wikipedia.org/wiki/Paramecium_bursaria_Chlorella_virus_CZ-2 Paramecium bursaria Chlorella virus CZ-2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9YQ5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9YQ5 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=UGA:URIDINE-5-DIPHOSPHATE-GLUCURONIC+ACID'>UGA</scene>, <scene name='pdbligand=Y01:CHOLESTEROL+HEMISUCCINATE'>Y01</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9yq5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9yq5 OCA], [https://pdbe.org/9yq5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9yq5 RCSB], [https://www.ebi.ac.uk/pdbsum/9yq5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9yq5 ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Hyaluronan (HA) is an essential polysaccharide of the vertebrate extracellular matrix. It serves as an adhesive, lubricant, signaling molecule, and spatial filler without which embryogenesis would not complete. HA is synthesized by a membrane-integrated glycosyltransferase (HAS) that polymerizes UDP-activated N-acetylglucosamine and glucuronic acid (GlcA) in an alternating fashion. The nascent HA chain is secreted across the plasma membrane during this process. How HAS couples these tasks remains poorly understood. Here, we employ a combination of structural biology, biochemistry and glycobiology to delineate how HAS recognizes and utilizes UDP-GlcA. Using single-particle cryo-EM, we reveal a two-step process by which HAS binds its substrate UDP-GlcA. Prior to proper insertion into the catalytic pocket, the substrate is bound in a proofreading pose that may increase substrate selectivity. This state is accompanied by conformational changes of active site residues surrounding the UDP-binding pocket and involves a pair of basic residues that sense the substrate's carboxyl group. Further, we establish that HAS is unable to catalyze UDP-GlcA turnover in the absence of an acceptor sugar, emphasizing the role of a priming GlcNAc in glycosyl transfer. Lastly, cryo-EM snapshots of a dodecylmaltoside molecule trapped in the active site provide novel insights into substrate promiscuity. Here, our studies demonstrate that HAS catalyzes semi-selective GlcA-transfer to non-canonical beta-linked acceptors.
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Authors: Stephens, Z., Zimmer, J.
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Insights into substrate binding and utilization by hyaluronan synthase.,Stephens Z, Karasinska J, Zimmer J bioRxiv [Preprint]. 2025 Oct 18:2025.10.17.683186. doi: , 10.1101/2025.10.17.683186. PMID:41280022<ref>PMID:41280022</ref>
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Description: Chlorella virus hyaluronan synthase bound to an inserted UDP-GlcA
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Zimmer, J]]
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<div class="pdbe-citations 9yq5" style="background-color:#fffaf0;"></div>
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[[Category: Stephens, Z]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Lama glama]]
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[[Category: Large Structures]]
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[[Category: Paramecium bursaria Chlorella virus CZ-2]]
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[[Category: Stephens Z]]
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[[Category: Zimmer J]]

Current revision

Chlorella virus hyaluronan synthase bound to an inserted UDP-GlcA

PDB ID 9yq5

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