2b3k
From Proteopedia
(New page: 200px<br /> <applet load="2b3k" size="450" color="white" frame="true" align="right" spinBox="true" caption="2b3k, resolution 1.550Å" /> '''Crystal structure ...) |
|||
| Line 1: | Line 1: | ||
| - | [[Image:2b3k.gif|left|200px]]<br /> | + | [[Image:2b3k.gif|left|200px]]<br /><applet load="2b3k" size="350" color="white" frame="true" align="right" spinBox="true" |
| - | <applet load="2b3k" size=" | + | |
caption="2b3k, resolution 1.550Å" /> | caption="2b3k, resolution 1.550Å" /> | ||
'''Crystal structure of Human Methionine Aminopeptidase Type I in the holo form'''<br /> | '''Crystal structure of Human Methionine Aminopeptidase Type I in the holo form'''<br /> | ||
==Overview== | ==Overview== | ||
| - | Determination of the crystal structure of human MetAP1 makes it possible, for the first time, to compare the structures of a Type I and a Type II | + | Determination of the crystal structure of human MetAP1 makes it possible, for the first time, to compare the structures of a Type I and a Type II methionine aminopeptidase (MetAP) from the same organism. Comparison of the Type I enzyme with the previously reported complex of ovalicin with Type II MetAP shows that the active site of the former is reduced in size and would incur steric clashes with the bound inhibitor. This explains why ovalicin and related anti-angiogenesis inhibitors target Type II human MetAP but not Type I. The differences in both size and shape of the active sites between MetAP1 and MetAP2 also help to explain their different substrate specificity. In the presence of excess Co(2+), a third cobalt ion binds in the active site region, explaining why metal ions in excess can be inhibitory. Also, the N-terminal region of the protein contains three distinct Pro-x-x-Pro motifs, supporting the prior suggestion that this region of the protein may participate in binding to the ribosome. |
==About this Structure== | ==About this Structure== | ||
| - | 2B3K is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with CO, K, ACT and GOL as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Methionyl_aminopeptidase Methionyl aminopeptidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.11.18 3.4.11.18] Full crystallographic information is available from [http:// | + | 2B3K is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with <scene name='pdbligand=CO:'>CO</scene>, <scene name='pdbligand=K:'>K</scene>, <scene name='pdbligand=ACT:'>ACT</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Methionyl_aminopeptidase Methionyl aminopeptidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.11.18 3.4.11.18] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2B3K OCA]. |
==Reference== | ==Reference== | ||
| Line 17: | Line 16: | ||
[[Category: Addlagatta, A.]] | [[Category: Addlagatta, A.]] | ||
[[Category: Hu, X.]] | [[Category: Hu, X.]] | ||
| - | [[Category: Liu, J | + | [[Category: Liu, J O.]] |
| - | [[Category: Matthews, B | + | [[Category: Matthews, B W.]] |
[[Category: ACT]] | [[Category: ACT]] | ||
[[Category: CO]] | [[Category: CO]] | ||
| Line 28: | Line 27: | ||
[[Category: petabread fold]] | [[Category: petabread fold]] | ||
| - | ''Page seeded by [http:// | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 16:33:46 2008'' |
Revision as of 14:33, 21 February 2008
|
Crystal structure of Human Methionine Aminopeptidase Type I in the holo form
Overview
Determination of the crystal structure of human MetAP1 makes it possible, for the first time, to compare the structures of a Type I and a Type II methionine aminopeptidase (MetAP) from the same organism. Comparison of the Type I enzyme with the previously reported complex of ovalicin with Type II MetAP shows that the active site of the former is reduced in size and would incur steric clashes with the bound inhibitor. This explains why ovalicin and related anti-angiogenesis inhibitors target Type II human MetAP but not Type I. The differences in both size and shape of the active sites between MetAP1 and MetAP2 also help to explain their different substrate specificity. In the presence of excess Co(2+), a third cobalt ion binds in the active site region, explaining why metal ions in excess can be inhibitory. Also, the N-terminal region of the protein contains three distinct Pro-x-x-Pro motifs, supporting the prior suggestion that this region of the protein may participate in binding to the ribosome.
About this Structure
2B3K is a Single protein structure of sequence from Homo sapiens with , , and as ligands. Active as Methionyl aminopeptidase, with EC number 3.4.11.18 Full crystallographic information is available from OCA.
Reference
Structural basis for the functional differences between type I and type II human methionine aminopeptidases., Addlagatta A, Hu X, Liu JO, Matthews BW, Biochemistry. 2005 Nov 15;44(45):14741-9. PMID:16274222
Page seeded by OCA on Thu Feb 21 16:33:46 2008
Categories: Homo sapiens | Methionyl aminopeptidase | Single protein | Addlagatta, A. | Hu, X. | Liu, J O. | Matthews, B W. | ACT | CO | GOL | K | Hydrolase | Metalloprotease | Methionine aminopeptidase | Petabread fold
