This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1yf1

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
[[Image:1yf1.gif|left|200px]]
+
{{Seed}}
 +
[[Image:1yf1.png|left|200px]]
<!--
<!--
Line 9: Line 10:
{{STRUCTURE_1yf1| PDB=1yf1 | SCENE= }}
{{STRUCTURE_1yf1| PDB=1yf1 | SCENE= }}
-
'''Structural and biochemical analysis of the link between enzymatic activity and oligomerization in AhpC, a bacterial peroxiredoxin.'''
+
===Structural and biochemical analysis of the link between enzymatic activity and oligomerization in AhpC, a bacterial peroxiredoxin.===
-
==Overview==
+
<!--
-
Peroxiredoxins (Prxs) make up a ubiquitous class (proposed EC 1.11.1.15) of cysteine-dependent peroxidases with roles in oxidant protection and signal transduction. An intriguing biophysical property of typical 2-Cys Prxs is the redox-dependent modulation of their oligomeric state between decamers and dimers at physiological concentrations. The functional consequences of this linkage are unknown, but on the basis of structural considerations, we hypothesized that decamer-building (dimer-dimer) interactions serve to stabilize a loop that forms the peroxidatic active site. Here, we address this important issue by studying mutations of Thr77 at the decamer-building interface of AhpC from Salmonella typhimurium. Ultracentrifugation studies revealed that two of the substitutions (T77I and T77D) successfully disrupted the decamer, while the third (T77V) actually enhanced decamer stability. Crystal structures of the decameric forms of all three mutant proteins provide a rationale for their properties. A new assay allowed the first ever measurement of the true k(cat) and K(m) values of wild-type AhpC with H(2)O(2), placing the catalytic efficiency at 4 x 10(7) M(-)(1) s(-)(1). T77V had slightly higher activity than wild-type enzyme, and both T77I and T77D exhibited ca. 100-fold lower catalytic efficiency, indicating that the decameric structure is quite important for, but not essential to, activity. The interplay between decamer formation and active site loop dynamics is emphasized by a decreased susceptibility of T77I and T77D to peroxide-mediated inactivation, and by an increase in the crystallographic B-factors in the active site loop, rather than at the site of the mutation, in the T77D variant.
+
The line below this paragraph, {{ABSTRACT_PUBMED_16060667}}, adds the Publication Abstract to the page
 +
(as it appears on PubMed at http://www.pubmed.gov), where 16060667 is the PubMed ID number.
 +
-->
 +
{{ABSTRACT_PUBMED_16060667}}
==About this Structure==
==About this Structure==
Line 31: Line 35:
[[Category: Alkyl hydroperoxide reductase subunit c]]
[[Category: Alkyl hydroperoxide reductase subunit c]]
[[Category: Peroxiredoxin]]
[[Category: Peroxiredoxin]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 16:14:24 2008''
+
 
 +
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 19:59:50 2008''

Revision as of 16:59, 27 July 2008

Image:1yf1.png

Template:STRUCTURE 1yf1

Structural and biochemical analysis of the link between enzymatic activity and oligomerization in AhpC, a bacterial peroxiredoxin.

Template:ABSTRACT PUBMED 16060667

About this Structure

1YF1 is a Single protein structure of sequence from Salmonella typhimurium. Full crystallographic information is available from OCA.

Reference

Analysis of the link between enzymatic activity and oligomeric state in AhpC, a bacterial peroxiredoxin., Parsonage D, Youngblood DS, Sarma GN, Wood ZA, Karplus PA, Poole LB, Biochemistry. 2005 Aug 9;44(31):10583-92. PMID:16060667

Page seeded by OCA on Sun Jul 27 19:59:50 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1yf1"
Personal tools