This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
Template:STRUCTURE 2db3
From Proteopedia
(Difference between revisions)
m (Protected "Template:STRUCTURE 2db3" [edit=sysop:move=sysop]) |
|||
| Line 1: | Line 1: | ||
| - | {{ | + | {{StructureD |
| - | |PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE=350|CAPTION= 2db3, resolution 2.20Å (<scene name='initialview01'>initial scene</scene>) | + | |PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|2db3, resolution 2.20Å (<scene name='initialview01'>initial scene</scene>)}}} |
| - | + | |LIGAND= <scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene> | |
| - | |LIGAND= <scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG | + | |
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Adenosinetriphosphatase Adenosinetriphosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.3 3.6.1.3] </span> | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Adenosinetriphosphatase Adenosinetriphosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.3 3.6.1.3] </span> | ||
|GENE= VASA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7227 Drosophila melanogaster]) | |GENE= VASA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7227 Drosophila melanogaster]) | ||
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00079 HELICc], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00268 DEADc]</span> | |DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00079 HELICc], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00268 DEADc]</span> | ||
| - | |RELATEDENTRY= | ||
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2db3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2db3 OCA], [http://www.ebi.ac.uk/pdbsum/2db3 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2db3 RCSB]</span> | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2db3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2db3 OCA], [http://www.ebi.ac.uk/pdbsum/2db3 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2db3 RCSB]</span> | ||
| + | |FUNCTION={{GO|id=GO:0004386 | text = helicase activity}}{{GO|id=GO:0000166 | text = nucleotide binding}}{{GO|id=GO:0005515 | text = protein binding}}{{GO|id=GO:0008026 | text = ATP-dependent helicase activity}}{{GO|id=GO:0003723 | text = RNA binding}}{{GO|id=GO:0003676 | text = nucleic acid binding}}{{GO|id=GO:0003724 | text = RNA helicase activity}}{{GO|id=GO:0005524 | text = ATP binding}}{{GO|id=GO:0016787 | text = hydrolase activity}} | ||
| + | |PROCESS={{GO|id=GO:0007294 | text = germarium-derived oocyte fate determination}}{{GO|id=GO:0007293 | text = germarium-derived egg chamber formation}}{{GO|id=GO:0007316 | text = pole plasm RNA localization}}{{GO|id=GO:0046012 | text = positive regulation of oskar mRNA translation}}{{GO|id=GO:0030154 | text = cell differentiation}}{{GO|id=GO:0045727 | text = positive regulation of translation}}{{GO|id=GO:0008298 | text = intracellular mRNA localization}}{{GO|id=GO:0046843 | text = dorsal appendage formation}}{{GO|id=GO:0007275 | text = multicellular organismal development}}{{GO|id=GO:0030717 | text = karyosome formation}}{{GO|id=GO:0007314 | text = oocyte anterior/posterior axis determination}}{{GO|id=GO:0048477 | text = oogenesis}}{{GO|id=GO:0007315 | text = pole plasm assembly}}{{GO|id=GO:0048134 | text = germ-line cyst formation}}{{GO|id=GO:0046011 | text = regulation of oskar mRNA translation}}{{GO|id=GO:0006378 | text = mRNA polyadenylation}} | ||
| + | |COMPONENT={{GO|id=GO:0018994 | text = polar granule}} | ||
| + | |SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014014 Ipr014014], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014021 Ipr014021], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014001 Ipr014001], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR011545 Ipr011545], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000629 Ipr000629], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001650 Ipr001650]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00271 PF00271], [http://pfam.sanger.ac.uk/family?acc=PF00270 PF00270]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P09052 P09052]</span> | ||
}} | }} | ||
