We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

2ejr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
[[Image:2ejr.jpg|left|200px]]
+
{{Seed}}
 +
[[Image:2ejr.png|left|200px]]
<!--
<!--
Line 9: Line 10:
{{STRUCTURE_2ejr| PDB=2ejr | SCENE= }}
{{STRUCTURE_2ejr| PDB=2ejr | SCENE= }}
-
'''LSD1-tranylcypromine complex'''
+
===LSD1-tranylcypromine complex===
-
==Overview==
+
<!--
-
Transcriptional activity and chromatin structure accessibility are correlated with the methylation of specific histone residues. Lysine-specific demethylase 1 (LSD1) is the first discovered histone demethylase, which demethylates Lys4 or Lys9 of histone H3, using FAD. Among the known monoamine oxidase inhibitors, tranylcypromine (Parnate) showed the most potent inhibitory effect on LSD1. Recently, the crystal structure of LSD1 and tranylcypromine was solved at 2.75 A, revealing a five-membered ring fused to the flavin of LSD1. In this study, we refined the crystal structure of the LSD1-tranylcypromine complex to 2.25 A. The five-membered ring model did not fit completely with the electron density, giving R(work)/R(free) values of 0.226/0.254. On the other hand, the N(5) adduct gave the lowest R(work)/R(free) values of 0.218/0.248, among the tested models. These results imply that the LSD1-tranylcypromine complex is not completely composed of the five-membered adduct, but partially contains an intermediate, such as the N(5) adduct.
+
The line below this paragraph, {{ABSTRACT_PUBMED_18039463}}, adds the Publication Abstract to the page
 +
(as it appears on PubMed at http://www.pubmed.gov), where 18039463 is the PubMed ID number.
 +
-->
 +
{{ABSTRACT_PUBMED_18039463}}
==About this Structure==
==About this Structure==
Line 49: Line 53:
[[Category: Transcription regulation]]
[[Category: Transcription regulation]]
[[Category: Tranylcypromine]]
[[Category: Tranylcypromine]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 02:38:55 2008''
+
 
 +
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 22:24:35 2008''

Revision as of 19:24, 28 July 2008

Image:2ejr.png

Template:STRUCTURE 2ejr

LSD1-tranylcypromine complex

Template:ABSTRACT PUBMED 18039463

About this Structure

2EJR is a Single protein structure of sequence from Homo sapiens. Full crystallographic information is available from OCA.

Reference

Crystal structure of histone demethylase LSD1 and tranylcypromine at 2.25 A., Mimasu S, Sengoku T, Fukuzawa S, Umehara T, Yokoyama S, Biochem Biophys Res Commun. 2008 Feb 1;366(1):15-22. Epub 2007 Nov 26. PMID:18039463

Page seeded by OCA on Mon Jul 28 22:24:35 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2ejr"
Personal tools