This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2g8j

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
[[Image:2g8j.gif|left|200px]]
+
{{Seed}}
 +
[[Image:2g8j.png|left|200px]]
<!--
<!--
Line 9: Line 10:
{{STRUCTURE_2g8j| PDB=2g8j | SCENE= }}
{{STRUCTURE_2g8j| PDB=2g8j | SCENE= }}
-
'''Calpain 1 proteolytic core in complex with SNJ-1945, a alpha-ketoamide-type inhibitor.'''
+
===Calpain 1 proteolytic core in complex with SNJ-1945, a alpha-ketoamide-type inhibitor.===
-
==Overview==
+
<!--
-
Calpains are intracellular calcium-activated cysteine proteases whose unregulated proteolysis following the loss of calcium homeostasis can lead to acute degeneration during ischemic episodes and trauma, as well as Alzheimer's disease and cataract formation. The determination of the crystal structure of the proteolytic core of mu-calpain (muI-II) in a calcium-bound active conformation has made structure-guided design of active site inhibitors feasible. We present here high-resolution crystal structures of rat muI-II complexed with two reversible calpain-specific inhibitors employing cyclic hemiacetal (SNJ-1715) and alpha-ketoamide (SNJ-1945) chemistries that reveal new details about the interactions of inhibitors with this enzyme. The SNJ-1715 complex confirms that the free aldehyde is the reactive species of the cornea-permeable cyclic hemiacetal. The alpha-ketoamide warhead of SNJ-1945 binds with the hydroxyl group of the tetrahedral adduct pointing toward the catalytic histidine rather than the oxyanion hole. The muI-II-SNJ-1945 complex shows residue Glu261 displaced from the S1' site by the inhibitor, resulting in an extended "open" conformation of the domain II gating loop and an unobstructed S1' site. This conformation offers an additional template for structure-based drug design extending to the primed subsites. An important role for the highly conserved Glu261 is proposed.
+
The line below this paragraph, {{ABSTRACT_PUBMED_16768440}}, adds the Publication Abstract to the page
 +
(as it appears on PubMed at http://www.pubmed.gov), where 16768440 is the PubMed ID number.
 +
-->
 +
{{ABSTRACT_PUBMED_16768440}}
==About this Structure==
==About this Structure==
Line 31: Line 35:
[[Category: Peptidase]]
[[Category: Peptidase]]
[[Category: Protease]]
[[Category: Protease]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 04:49:15 2008''
+
 
 +
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 03:17:08 2008''

Revision as of 00:17, 28 July 2008

Image:2g8j.png

Template:STRUCTURE 2g8j

Calpain 1 proteolytic core in complex with SNJ-1945, a alpha-ketoamide-type inhibitor.

Template:ABSTRACT PUBMED 16768440

About this Structure

2G8J is a Single protein structure of sequence from Rattus norvegicus. Full crystallographic information is available from OCA.

Reference

Calpain inhibition by alpha-ketoamide and cyclic hemiacetal inhibitors revealed by X-ray crystallography., Cuerrier D, Moldoveanu T, Inoue J, Davies PL, Campbell RL, Biochemistry. 2006 Jun 20;45(24):7446-52. PMID:16768440

Page seeded by OCA on Mon Jul 28 03:17:08 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2g8j"
Personal tools