1dd4
From Proteopedia
(New page: 200px<br /><applet load="1dd4" size="450" color="white" frame="true" align="right" spinBox="true" caption="1dd4, resolution 2.4Å" /> '''Crystal structure of ...) |
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| - | [[Image:1dd4.gif|left|200px]]<br /><applet load="1dd4" size=" | + | [[Image:1dd4.gif|left|200px]]<br /><applet load="1dd4" size="350" color="white" frame="true" align="right" spinBox="true" |
caption="1dd4, resolution 2.4Å" /> | caption="1dd4, resolution 2.4Å" /> | ||
'''Crystal structure of ribosomal protein l12 from thermotoga maritim'''<br /> | '''Crystal structure of ribosomal protein l12 from thermotoga maritim'''<br /> | ||
==Overview== | ==Overview== | ||
| - | Protein L12, the only multicopy component of the ribosome, is presumed to | + | Protein L12, the only multicopy component of the ribosome, is presumed to be involved in the binding of translation factors, stimulating factor-dependent GTP hydrolysis. Crystal structures of L12 from Thermotogamaritima have been solved in two space groups by the multiple anomalous dispersion method and refined at 2.4 and 2.0 A resolution. In both crystal forms, an asymmetric unit comprises two full-length L12 molecules and two N-terminal L12 fragments that are associated in a specific, hetero-tetrameric complex with one non-crystallographic 2-fold axis. The two full-length proteins form a tight, symmetric, parallel dimer, mainly through their N-terminal domains. Each monomer of this central dimer additionally associates in a different way with an N-terminal L12 fragment. Both dimerization modes are unlike models proposed previously and suggest that similar complexes may occur in vivo and in situ. The structures also display different L12 monomer conformations, in accord with the suggested dynamic role of the protein in the ribosomal translocation process. The structures have been submitted to the Protein Databank (http://www.rcsb.org/pdb) under accession numbers 1DD3 and 1DD4. |
==About this Structure== | ==About this Structure== | ||
| - | 1DD4 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima] with TBR as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http:// | + | 1DD4 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima] with <scene name='pdbligand=TBR:'>TBR</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DD4 OCA]. |
==Reference== | ==Reference== | ||
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[[Category: Single protein]] | [[Category: Single protein]] | ||
[[Category: Thermotoga maritima]] | [[Category: Thermotoga maritima]] | ||
| - | [[Category: Bartunik, H | + | [[Category: Bartunik, H D.]] |
| - | [[Category: Bourenkov, G | + | [[Category: Bourenkov, G P.]] |
[[Category: Huber, R.]] | [[Category: Huber, R.]] | ||
| - | [[Category: Wahl, M | + | [[Category: Wahl, M C.]] |
[[Category: TBR]] | [[Category: TBR]] | ||
[[Category: alpha-beta structure]] | [[Category: alpha-beta structure]] | ||
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[[Category: hinge region]] | [[Category: hinge region]] | ||
| - | ''Page seeded by [http:// | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 12:15:25 2008'' |
Revision as of 10:15, 21 February 2008
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Crystal structure of ribosomal protein l12 from thermotoga maritim
Overview
Protein L12, the only multicopy component of the ribosome, is presumed to be involved in the binding of translation factors, stimulating factor-dependent GTP hydrolysis. Crystal structures of L12 from Thermotogamaritima have been solved in two space groups by the multiple anomalous dispersion method and refined at 2.4 and 2.0 A resolution. In both crystal forms, an asymmetric unit comprises two full-length L12 molecules and two N-terminal L12 fragments that are associated in a specific, hetero-tetrameric complex with one non-crystallographic 2-fold axis. The two full-length proteins form a tight, symmetric, parallel dimer, mainly through their N-terminal domains. Each monomer of this central dimer additionally associates in a different way with an N-terminal L12 fragment. Both dimerization modes are unlike models proposed previously and suggest that similar complexes may occur in vivo and in situ. The structures also display different L12 monomer conformations, in accord with the suggested dynamic role of the protein in the ribosomal translocation process. The structures have been submitted to the Protein Databank (http://www.rcsb.org/pdb) under accession numbers 1DD3 and 1DD4.
About this Structure
1DD4 is a Single protein structure of sequence from Thermotoga maritima with as ligand. Full crystallographic information is available from OCA.
Reference
Flexibility, conformational diversity and two dimerization modes in complexes of ribosomal protein L12., Wahl MC, Bourenkov GP, Bartunik HD, Huber R, EMBO J. 2000 Jan 17;19(2):174-86. PMID:10637222
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