This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.

Template:STRUCTURE 1b4x

From Proteopedia

(Difference between revisions)

Jump to: navigation, search

Revision as of 14:46, 17 February 2009

1b4x, resolution 2.45Å ()

Ligands:

Activity:

Aspartate transaminase, with EC number 2.6.1.1

Domains:

PRK09257

Structural annotation:
Resources:	CATH : 1B4Xa01, 1B4Xa02 InterPro : Ipr000796, Ipr004839, Ipr015421, Ipr015424, Ipr004838 Pfam : PF00155 SCOP : d1b4xa_ UniProt : P00509

Functional annotation:
Cellular component:	cytoplasm
Biological process:	biosynthetic process amino acid metabolic process
Molecular function:	pyridoxal phosphate binding catalytic activity transferase activity, transferring nitrogenous groups aspartate transaminase activity transaminase activity protein binding transferase activity

Evolutionary conservation:

Toggle Conservation Colors:	Rows = identical sequences:
Further Information:	Caveats, Explanation, Complete Results at ConSurfDB

Resources:

FirstGlance, OCA, PDBsum, RCSB

Coordinates:

save as pdb, mmCIF, xml

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/Template:STRUCTURE_1b4x"

@@ Line 1: / Line 1: @@
-{{StructureD
+{{Structure
-|PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|1b4x, resolution 2.45&Aring; (<scene name='initialview01'>initial scene</scene>)}}}
+|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1b4x]], resolution 2.45&Aring; (<scene name='initialview01'>default scene</scene>)}}}
 |LIGAND= <scene name='pdbligand=MAE:MALEIC+ACID'>MAE</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene>
 |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Aspartate_transaminase Aspartate transaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.1 2.6.1.1] </span>
@@ Line 9: / Line 9: @@
 |COMPONENT={{GO|id=GO:0005737 | text = cytoplasm}}
 |SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1b4xA01 1B4Xa01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1b4xA02 1B4Xa02]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000796 Ipr000796], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR004839 Ipr004839], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR015421 Ipr015421], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR015424 Ipr015424], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR004838 Ipr004838]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00155 PF00155]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=34329 d1b4xa_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P00509 P00509]</span>
+|CONSURF={{!}}-
+{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
+{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
+{{!}} '''Toggle Conservation Colors:'''
+{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
+Rows = identical sequences:
+<jmol>
+<jmolButton>
+<script></script>
+<text>A [x]</text>
+<name>jmb_1b4x_A</name>
+<title>toggle chain A</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
 }}

Template:STRUCTURE 1b4x

From Proteopedia

Revision as of 14:46, 17 February 2009

Proteopedia Page Contributors and Editors (what is this?)

Views

Personal tools

Navigation

Search

Toolbox