1gdv
From Proteopedia
(New page: 200px<br /><applet load="1gdv" size="450" color="white" frame="true" align="right" spinBox="true" caption="1gdv, resolution 1.57Å" /> '''CRYSTAL STRUCTURE OF...) |
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| - | [[Image:1gdv.jpg|left|200px]]<br /><applet load="1gdv" size=" | + | [[Image:1gdv.jpg|left|200px]]<br /><applet load="1gdv" size="350" color="white" frame="true" align="right" spinBox="true" |
caption="1gdv, resolution 1.57Å" /> | caption="1gdv, resolution 1.57Å" /> | ||
'''CRYSTAL STRUCTURE OF CYTOCHROME C6 FROM RED ALGA PORPHYRA YEZOENSIS AT 1.57 A RESOLUTION'''<br /> | '''CRYSTAL STRUCTURE OF CYTOCHROME C6 FROM RED ALGA PORPHYRA YEZOENSIS AT 1.57 A RESOLUTION'''<br /> | ||
==Overview== | ==Overview== | ||
| - | The crystal structure of cytochrome c(6) from the red alga Porphyra | + | The crystal structure of cytochrome c(6) from the red alga Porphyra yezoensis has been determined at 1.57 A resolution. The crystal is tetragonal and belongs to space group P4(3)2(1)2, with unit-cell parameters a = b = 49.26 (3), c = 83.45 (4) A and one molecule per asymmetric unit. The structure was solved by the molecular-replacement method and refined with X-PLOR to an R factor of 19.9% and a free R factor of 25.4%. The overall structure of cytochrome c(6) follows the topology of class I c-type cytochromes in which the heme prosthetic group covalently binds to Cys14 and Cys17, and the iron has an octahedral coordination with His18 and Met58 as the axial ligands. The sequence and the structure of the eukaryotic red algal cytochrome c(6) are very similar to those of a prokaryotic cyanobacterial cytochrome c(6) rather than those of eukaryotic green algal c(6) cytochromes. |
==About this Structure== | ==About this Structure== | ||
| - | 1GDV is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Porphyra_yezoensis Porphyra yezoensis] with HEM as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http:// | + | 1GDV is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Porphyra_yezoensis Porphyra yezoensis] with <scene name='pdbligand=HEM:'>HEM</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GDV OCA]. |
==Reference== | ==Reference== | ||
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[[Category: Single protein]] | [[Category: Single protein]] | ||
[[Category: Oku, T.]] | [[Category: Oku, T.]] | ||
| - | [[Category: Park, S | + | [[Category: Park, S Y.]] |
[[Category: Shimizu, H.]] | [[Category: Shimizu, H.]] | ||
[[Category: Shiro, Y.]] | [[Category: Shiro, Y.]] | ||
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[[Category: red alga]] | [[Category: red alga]] | ||
| - | ''Page seeded by [http:// | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 12:49:02 2008'' |
Revision as of 10:49, 21 February 2008
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CRYSTAL STRUCTURE OF CYTOCHROME C6 FROM RED ALGA PORPHYRA YEZOENSIS AT 1.57 A RESOLUTION
Overview
The crystal structure of cytochrome c(6) from the red alga Porphyra yezoensis has been determined at 1.57 A resolution. The crystal is tetragonal and belongs to space group P4(3)2(1)2, with unit-cell parameters a = b = 49.26 (3), c = 83.45 (4) A and one molecule per asymmetric unit. The structure was solved by the molecular-replacement method and refined with X-PLOR to an R factor of 19.9% and a free R factor of 25.4%. The overall structure of cytochrome c(6) follows the topology of class I c-type cytochromes in which the heme prosthetic group covalently binds to Cys14 and Cys17, and the iron has an octahedral coordination with His18 and Met58 as the axial ligands. The sequence and the structure of the eukaryotic red algal cytochrome c(6) are very similar to those of a prokaryotic cyanobacterial cytochrome c(6) rather than those of eukaryotic green algal c(6) cytochromes.
About this Structure
1GDV is a Single protein structure of sequence from Porphyra yezoensis with as ligand. Full crystallographic information is available from OCA.
Reference
Structure of cytochrome c6 from the red alga Porphyra yezoensis at 1. 57 A resolution., Yamada S, Park SY, Shimizu H, Koshizuka Y, Kadokura K, Satoh T, Suruga K, Ogawa M, Isogai Y, Nishio T, Shiro Y, Oku T, Acta Crystallogr D Biol Crystallogr. 2000 Dec;56(Pt 12):1577-82. PMID:11092924
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