This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
Template:STRUCTURE 1j8s
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
| - | {{ | + | {{Structure |
| - | |PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|1j8s, resolution 2.10Å (<scene name='initialview01'> | + | |PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1j8s]], resolution 2.10Å (<scene name='initialview01'>default scene</scene>)}}} |
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00239 PapGII-like_RBD]</span> | |DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00239 PapGII-like_RBD]</span> | ||
|NONSTDRES=<scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene> | |NONSTDRES=<scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene> | ||
| Line 7: | Line 7: | ||
|PROCESS={{GO|id=GO:0007155 | text = cell adhesion}} | |PROCESS={{GO|id=GO:0007155 | text = cell adhesion}} | ||
|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1j8sA00 1J8Sa00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR005309 Ipr005309], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR005310 Ipr005310], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR008966 Ipr008966]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF03627 PF03627]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=62746 d1j8sa_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?Q47450 Q47450]</span> | |SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1j8sA00 1J8Sa00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR005309 Ipr005309], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR005310 Ipr005310], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR008966 Ipr008966]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF03627 PF03627]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=62746 d1j8sa_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?Q47450 Q47450]</span> | ||
| + | |CONSURF={{!}}- | ||
| + | {{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]] | ||
| + | {{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" | ||
| + | {{!}} '''Toggle Conservation Colors:''' | ||
| + | {{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}} | ||
| + | Rows = identical sequences: | ||
| + | <jmol> | ||
| + | <jmolButton> | ||
| + | <script></script> | ||
| + | <text>A [x]</text> | ||
| + | <name>jmb_1j8s_A</name> | ||
| + | <title>toggle chain A</title> | ||
| + | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| + | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| + | </jmolButton> | ||
| + | </jmol> | ||
| + | |||
}} | }} | ||
Revision as of 22:26, 17 February 2009
| |||||||||
| 1j8s, resolution 2.10Å () | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Non-Standard Residues: | |||||||||
| Domains: | PapGII-like_RBD | ||||||||
| |||||||||
| |||||||||
| |||||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||||

