Template:STRUCTURE 1m8q

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Revision as of 20:13, 17 February 2009

1m8q ()

Non-Standard Residues:

Domains:

ACTIN, Actin, MYSc_type_II, Myosin_N, EFh, FRQ1

Related:

2mys, 1atn

Structural annotation:

Resources:

InterPro : Ipr004000, Ipr004001, Ipr004009, Ipr002928, Ipr001609, Ipr000048, Ipr015650, Ipr002048, Ipr011992
Pfam : PF00022, PF00612, PF02736, PF00063, PF00036
SCOP : d1m8qa_, d1m8qg_, d1m8qb_, d1m8qh_, d1m8qc_, d1m8qi_, d1m8q7_, d1m8q5_, d1m8q4_, d1m8q3_, d1m8q2_, d1m8q1_, d1m8q0_, d1m8qz_, d1m8qy_, d1m8qx_, d1m8qw_, d1m8qv_, d1m8q9_, d1m8q8_, d1m8qr_, d1m8qf_, d1m8qq_, d1m8qe_, d1m8qp_, d1m8qd_
UniProt : P68135, P13538, P02609, P02604

Functional annotation:
Cellular component:	actin filament cytoskeleton striated muscle thin filament stress fiber cytoplasm striated muscle thick filament myosin complex
Biological process:	skeletal muscle fiber development muscle thin filament assembly striated muscle contraction
Molecular function:	nucleotide binding structural molecule activity ATP binding protein binding calmodulin binding motor activity actin binding calcium ion binding

Evolutionary conservation:

Toggle Conservation Colors:

Rows = identical sequences:

Further Information:

Caveats,

Explanation,
Complete Results at ConSurfDB

Resources:

FirstGlance, OCA, PDBsum, RCSB

Coordinates:

save as pdb, mmCIF, xml

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OCA

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Template:STRUCTURE 1m8q

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Revision as of 20:13, 17 February 2009

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@@ Line 1: / Line 1: @@
-{{StructureD
+{{Structure
-|PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|1m8q (<scene name='initialview01'>initial scene</scene>)}}}
+|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1m8q]] (<scene name='initialview01'>default scene</scene>)}}}
 |DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00012 ACTIN], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam00022 Actin], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01377 MYSc_type_II], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam02736 Myosin_N], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00051 EFh], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG5126 FRQ1]</span>
 |RELATEDENTRY=[[2mys|2mys]], [[1atn|1atn]]
@@ Line 9: / Line 9: @@
 |COMPONENT={{GO|id=GO:0005884 | text = actin filament}}{{GO|id=GO:0005856 | text = cytoskeleton}}{{GO|id=GO:0005865 | text = striated muscle thin filament}}{{GO|id=GO:0001725 | text = stress fiber}}{{GO|id=GO:0005737 | text = cytoplasm}}{{GO|id=GO:0005863 | text = striated muscle thick filament}}{{GO|id=GO:0016459 | text = myosin complex}}
 |SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR004000 Ipr004000], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR004001 Ipr004001], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR004009 Ipr004009], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002928 Ipr002928], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001609 Ipr001609], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000048 Ipr000048], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR015650 Ipr015650], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002048 Ipr002048], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR011992 Ipr011992]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00022 PF00022], [http://pfam.sanger.ac.uk/family?acc=PF00612 PF00612], [http://pfam.sanger.ac.uk/family?acc=PF02736 PF02736], [http://pfam.sanger.ac.uk/family?acc=PF00063 PF00063], [http://pfam.sanger.ac.uk/family?acc=PF00036 PF00036]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78795 d1m8qa_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78801 d1m8qg_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78796 d1m8qb_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78802 d1m8qh_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78797 d1m8qc_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78803 d1m8qi_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78792 d1m8q7_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78791 d1m8q5_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78790 d1m8q4_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78789 d1m8q3_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78788 d1m8q2_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78787 d1m8q1_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78786 d1m8q0_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78811 d1m8qz_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78810 d1m8qy_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78809 d1m8qx_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78808 d1m8qw_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78807 d1m8qv_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78794 d1m8q9_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78793 d1m8q8_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78806 d1m8qr_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78800 d1m8qf_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78805 d1m8qq_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78799 d1m8qe_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78804 d1m8qp_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=78798 d1m8qd_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P68135 P68135], [http://ca.expasy.org/cgi-bin/niceprot.pl?P13538 P13538], [http://ca.expasy.org/cgi-bin/niceprot.pl?P02609 P02609], [http://ca.expasy.org/cgi-bin/niceprot.pl?P02604 P02604]</span>
+|CONSURF={{!}}-
+{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
+{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
+{{!}} '''Toggle Conservation Colors:'''
+{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
+Rows = identical sequences:
+<jmol>
+<jmolButton>
+<script></script>
+<text>A [x]</text>
+<name>jmb_1m8q_A</name>
+<title>toggle chain A</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>D [x]</text>
+<name>jmb_1m8q_D</name>
+<title>toggle chain D</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>G [x]</text>
+<name>jmb_1m8q_G</name>
+<title>toggle chain G</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>J [x]</text>
+<name>jmb_1m8q_J</name>
+<title>toggle chain J</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>B [x]</text>
+<name>jmb_1m8q_B</name>
+<title>toggle chain B</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>E [x]</text>
+<name>jmb_1m8q_E</name>
+<title>toggle chain E</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>H [x]</text>
+<name>jmb_1m8q_H</name>
+<title>toggle chain H</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>K [x]</text>
+<name>jmb_1m8q_K</name>
+<title>toggle chain K</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>C [x]</text>
+<name>jmb_1m8q_C</name>
+<title>toggle chain C</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>F [x]</text>
+<name>jmb_1m8q_F</name>
+<title>toggle chain F</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>I [x]</text>
+<name>jmb_1m8q_I</name>
+<title>toggle chain I</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>L [x]</text>
+<name>jmb_1m8q_L</name>
+<title>toggle chain L</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>M [x]</text>
+<name>jmb_1m8q_M</name>
+<title>toggle chain M</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>N [x]</text>
+<name>jmb_1m8q_N</name>
+<title>toggle chain N</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>O [x]</text>
+<name>jmb_1m8q_O</name>
+<title>toggle chain O</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>P [x]</text>
+<name>jmb_1m8q_P</name>
+<title>toggle chain P</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>Q [x]</text>
+<name>jmb_1m8q_Q</name>
+<title>toggle chain Q</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>R [x]</text>
+<name>jmb_1m8q_R</name>
+<title>toggle chain R</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>S [x]</text>
+<name>jmb_1m8q_S</name>
+<title>toggle chain S</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>T [x]</text>
+<name>jmb_1m8q_T</name>
+<title>toggle chain T</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>U [x]</text>
+<name>jmb_1m8q_U</name>
+<title>toggle chain U</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>V [x]</text>
+<name>jmb_1m8q_V</name>
+<title>toggle chain V</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>W [x]</text>
+<name>jmb_1m8q_W</name>
+<title>toggle chain W</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>X [x]</text>
+<name>jmb_1m8q_X</name>
+<title>toggle chain X</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>Y [x]</text>
+<name>jmb_1m8q_Y</name>
+<title>toggle chain Y</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>Z [x]</text>
+<name>jmb_1m8q_Z</name>
+<title>toggle chain Z</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
 }}