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Template:STRUCTURE 1o9k

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Revision as of 13:41, 16 February 2009

1o9k, resolution 2.60Å ()

Domains:

RB_A, RB_B, Rb_C

Structural annotation:
Resources:	CATH : 1O9Ka00, 1O9Kb00, 1O9Kc00, 1O9Kd00, 1O9Ke00, 1O9Kf00, 1O9Kg00, 1O9Kh00 InterPro : Ipr013763, Ipr006670, Ipr015652, Ipr015030, Ipr011028, Ipr002720, Ipr002719, Ipr015634, Ipr015633, Ipr003316, Ipr011991 Pfam : PF01858, PF01857, PF08934 SCOP : d1o9ka_, d1o9kb_, d1o9kc_, d1o9kd_, d1o9ke_, d1o9kf_, d1o9kg_, d1o9kh_ UniProt : P06400, Q01094

Functional annotation:
Resources:	GeneCard : RB1, E2F1
Cellular component:	nucleus PML body chromatin transcription factor complex cytoplasm
Biological process:	negative regulation of cell cycle negative regulation of cell growth cell cycle negative regulation of protein kinase activity G1 phase transcription negative regulation of transcription from RNA polymerase II promoter positive regulation of transcription, DNA-dependent regulation of transcription, DNA-dependent regulation of lipid kinase activity chromatin modification androgen receptor signaling pathway cell cycle checkpoint M phase forebrain development cell proliferation apoptosis positive regulation of transcription from RNA polymerase II promoter G1 phase of mitotic cell cycle
Molecular function:	kinase binding protein binding androgen receptor binding DNA binding transcription coactivator activity transcription factor activity transcription corepressor activity transcription activator activity

Evolutionary conservation:

Toggle Conservation Colors:

Rows = identical sequences:

Further Information:

Caveats,

Explanation,
Complete Results at ConSurfDB

Resources:

FirstGlance, OCA, PDBsum, RCSB

Coordinates:

save as pdb, mmCIF, xml

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/Template:STRUCTURE_1o9k"

@@ Line 1: / Line 1: @@
-{{StructureD
+{{Structure
-|PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|1o9k, resolution 2.60&Aring; (<scene name='initialview01'>initial scene</scene>)}}}
+|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1o9k]], resolution 2.60&Aring; (<scene name='initialview01'>default scene</scene>)}}}
 |DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam01858 RB_A], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam01857 RB_B], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam08934 Rb_C]</span>
 |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1o9k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o9k OCA], [http://www.ebi.ac.uk/pdbsum/1o9k PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1o9k RCSB]</span>
@@ Line 8: / Line 8: @@
 |SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1o9kA00 1O9Ka00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1o9kB00 1O9Kb00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1o9kC00 1O9Kc00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1o9kD00 1O9Kd00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1o9kE00 1O9Ke00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1o9kF00 1O9Kf00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1o9kG00 1O9Kg00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1o9kH00 1O9Kh00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013763 Ipr013763], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006670 Ipr006670], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR015652 Ipr015652], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR015030 Ipr015030], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR011028 Ipr011028], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002720 Ipr002720], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002719 Ipr002719], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR015634 Ipr015634], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR015633 Ipr015633], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003316 Ipr003316], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR011991 Ipr011991]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF01858 PF01858], [http://pfam.sanger.ac.uk/family?acc=PF01857 PF01857], [http://pfam.sanger.ac.uk/family?acc=PF08934 PF08934]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=86698 d1o9ka_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=86699 d1o9kb_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=86700 d1o9kc_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=86701 d1o9kd_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=86702 d1o9ke_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=86703 d1o9kf_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=86704 d1o9kg_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=86705 d1o9kh_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P06400 P06400], [http://ca.expasy.org/cgi-bin/niceprot.pl?Q01094 Q01094]</span>
 |FARESOURCES=<span class='plainlinks'>GeneCard : [http://www.genecards.org/cgi-bin/carddisp.pl?id=RB1 RB1], [http://www.genecards.org/cgi-bin/carddisp.pl?id=E2F1 E2F1]</span>
+|CONSURF={{!}}-
+{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
+{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
+{{!}} '''Toggle Conservation Colors:'''
+{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
+Rows = identical sequences:
+<jmol>
+<jmolButton>
+<script></script>
+<text>A [x]</text>
+<name>jmb_1o9k_A</name>
+<title>toggle chain A</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>C [x]</text>
+<name>jmb_1o9k_C</name>
+<title>toggle chain C</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>E [x]</text>
+<name>jmb_1o9k_E</name>
+<title>toggle chain E</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>G [x]</text>
+<name>jmb_1o9k_G</name>
+<title>toggle chain G</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>B [x]</text>
+<name>jmb_1o9k_B</name>
+<title>toggle chain B</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>D [x]</text>
+<name>jmb_1o9k_D</name>
+<title>toggle chain D</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>F [x]</text>
+<name>jmb_1o9k_F</name>
+<title>toggle chain F</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>H [x]</text>
+<name>jmb_1o9k_H</name>
+<title>toggle chain H</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>I [x]</text>
+<name>jmb_1o9k_I</name>
+<title>toggle chain I</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>J [x]</text>
+<name>jmb_1o9k_J</name>
+<title>toggle chain J</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>K [x]</text>
+<name>jmb_1o9k_K</name>
+<title>toggle chain K</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>L [x]</text>
+<name>jmb_1o9k_L</name>
+<title>toggle chain L</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
 }}

Template:STRUCTURE 1o9k

From Proteopedia

Revision as of 13:41, 16 February 2009

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