This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
Template:STRUCTURE 1ojs
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
{{Structure | {{Structure | ||
| - | |PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|1ojs, resolution 2.91Å (<scene name='initialview01'> | + | |PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1ojs]], resolution 2.91Å (<scene name='initialview01'>default scene</scene>)}}} |
|SITE= <scene name='pdbsite=NAD:So4+Binding+Site+For+Chain+A'>NAD</scene> | |SITE= <scene name='pdbsite=NAD:So4+Binding+Site+For+Chain+A'>NAD</scene> | ||
|LIGAND= <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene> | |LIGAND= <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene> | ||
| Line 7: | Line 7: | ||
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ojs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ojs OCA], [http://www.ebi.ac.uk/pdbsum/1ojs PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1ojs RCSB]</span> | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ojs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ojs OCA], [http://www.ebi.ac.uk/pdbsum/1ojs PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1ojs RCSB]</span> | ||
|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1ojsA02 1Ojsa02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1ojsA01 1Ojsa01]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?O08349 O08349]</span> | |SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1ojsA02 1Ojsa02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1ojsA01 1Ojsa01]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?O08349 O08349]</span> | ||
| + | |CONSURF={{!}}- | ||
| + | {{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]] | ||
| + | {{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" | ||
| + | {{!}} '''Toggle Conservation Colors:''' | ||
| + | {{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}} | ||
| + | Rows = identical sequences: | ||
| + | <jmol> | ||
| + | <jmolButton> | ||
| + | <script></script> | ||
| + | <text>A [x]</text> | ||
| + | <name>jmb_1ojs_A</name> | ||
| + | <title>toggle chain A</title> | ||
| + | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| + | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| + | </jmolButton> | ||
| + | </jmol> | ||
| + | |||
}} | }} | ||
Current revision
| |||||||||
| 1ojs, resolution 2.91Å () | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Sites: | |||||||||
| Ligands: | , , | ||||||||
| Activity: | Malate dehydrogenase, with EC number 1.1.1.37 | ||||||||
| Domains: | LDH-like_MDH, Mdh | ||||||||
| |||||||||
| |||||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||||

