1wfx
From Proteopedia
(New page: 200px<br /><applet load="1wfx" size="450" color="white" frame="true" align="right" spinBox="true" caption="1wfx, resolution 2.80Å" /> '''Crystal Structure of...) |
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| - | [[Image:1wfx.jpg|left|200px]]<br /><applet load="1wfx" size=" | + | [[Image:1wfx.jpg|left|200px]]<br /><applet load="1wfx" size="350" color="white" frame="true" align="right" spinBox="true" |
caption="1wfx, resolution 2.80Å" /> | caption="1wfx, resolution 2.80Å" /> | ||
'''Crystal Structure of APE0204 from Aeropyrum pernix'''<br /> | '''Crystal Structure of APE0204 from Aeropyrum pernix'''<br /> | ||
==Overview== | ==Overview== | ||
| - | In the final step of tRNA splicing, the 2'-phosphotransferase catalyzes | + | In the final step of tRNA splicing, the 2'-phosphotransferase catalyzes the transfer of the extra 2'-phosphate from the precursor-ligated tRNA to NAD. We have determined the crystal structure of the 2'-phosphotransferase protein from Aeropyrum pernix K1 at 2.8 Angstroms resolution. The structure of the 2'-phosphotransferase contains two globular domains (N and C-domains), which form a cleft in the center. The N-domain has the winged helix motif, a subfamily of the helix-turn-helix family, which is shared by many DNA-binding proteins. The C-domain of the 2'-phosphotransferase superimposes well on the NAD-binding fold of bacterial (diphtheria) toxins, which catalyze the transfer of ADP ribose from NAD to target proteins, indicating that the mode of NAD binding by the 2'-phosphotransferase could be similar to that of the bacterial toxins. The conserved basic residues are assembled at the periphery of the cleft and could participate in the enzyme contact with the sugar-phosphate backbones of tRNA. The modes by which the two functional domains recognize the two different substrates are clarified by the present crystal structure of the 2'-phosphotransferase. |
==About this Structure== | ==About this Structure== | ||
| - | 1WFX is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Aeropyrum_pernix Aeropyrum pernix] with ZN and CL as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http:// | + | 1WFX is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Aeropyrum_pernix Aeropyrum pernix] with <scene name='pdbligand=ZN:'>ZN</scene> and <scene name='pdbligand=CL:'>CL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WFX OCA]. |
==Reference== | ==Reference== | ||
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[[Category: Bessho, Y.]] | [[Category: Bessho, Y.]] | ||
[[Category: Kato-Murayama, M.]] | [[Category: Kato-Murayama, M.]] | ||
| - | [[Category: RSGI, RIKEN | + | [[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]] |
[[Category: Shirouzu, M.]] | [[Category: Shirouzu, M.]] | ||
[[Category: Yokoyama, S.]] | [[Category: Yokoyama, S.]] | ||
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[[Category: trna splicing]] | [[Category: trna splicing]] | ||
| - | ''Page seeded by [http:// | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 15:43:52 2008'' |
Revision as of 13:43, 21 February 2008
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Crystal Structure of APE0204 from Aeropyrum pernix
Overview
In the final step of tRNA splicing, the 2'-phosphotransferase catalyzes the transfer of the extra 2'-phosphate from the precursor-ligated tRNA to NAD. We have determined the crystal structure of the 2'-phosphotransferase protein from Aeropyrum pernix K1 at 2.8 Angstroms resolution. The structure of the 2'-phosphotransferase contains two globular domains (N and C-domains), which form a cleft in the center. The N-domain has the winged helix motif, a subfamily of the helix-turn-helix family, which is shared by many DNA-binding proteins. The C-domain of the 2'-phosphotransferase superimposes well on the NAD-binding fold of bacterial (diphtheria) toxins, which catalyze the transfer of ADP ribose from NAD to target proteins, indicating that the mode of NAD binding by the 2'-phosphotransferase could be similar to that of the bacterial toxins. The conserved basic residues are assembled at the periphery of the cleft and could participate in the enzyme contact with the sugar-phosphate backbones of tRNA. The modes by which the two functional domains recognize the two different substrates are clarified by the present crystal structure of the 2'-phosphotransferase.
About this Structure
1WFX is a Single protein structure of sequence from Aeropyrum pernix with and as ligands. Full crystallographic information is available from OCA.
Reference
Crystal structure of the RNA 2'-phosphotransferase from Aeropyrum pernix K1., Kato-Murayama M, Bessho Y, Shirouzu M, Yokoyama S, J Mol Biol. 2005 Apr 29;348(2):295-305. PMID:15811369
Page seeded by OCA on Thu Feb 21 15:43:52 2008
Categories: Aeropyrum pernix | Single protein | Bessho, Y. | Kato-Murayama, M. | RSGI, RIKEN Structural Genomics/Proteomics Initiative. | Shirouzu, M. | Yokoyama, S. | CL | ZN | Nad | Riken structural genomics/proteomics initiative | Rna 2'-phosphotransferase | Rsgi | Structural genomics | Trna splicing
