This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
1skm
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
| - | {{Seed}} | ||
[[Image:1skm.png|left|200px]] | [[Image:1skm.png|left|200px]] | ||
| - | <!-- | ||
| - | The line below this paragraph, containing "STRUCTURE_1skm", creates the "Structure Box" on the page. | ||
| - | You may change the PDB parameter (which sets the PDB file loaded into the applet) | ||
| - | or the SCENE parameter (which sets the initial scene displayed when the page is loaded), | ||
| - | or leave the SCENE parameter empty for the default display. | ||
| - | --> | ||
{{STRUCTURE_1skm| PDB=1skm | SCENE= }} | {{STRUCTURE_1skm| PDB=1skm | SCENE= }} | ||
===HhaI methyltransferase in complex with DNA containing an abasic south carbocyclic sugar at its target site=== | ===HhaI methyltransferase in complex with DNA containing an abasic south carbocyclic sugar at its target site=== | ||
| - | |||
| - | <!-- | ||
| - | The line below this paragraph, {{ABSTRACT_PUBMED_15273274}}, adds the Publication Abstract to the page | ||
| - | (as it appears on PubMed at http://www.pubmed.gov), where 15273274 is the PubMed ID number. | ||
| - | --> | ||
{{ABSTRACT_PUBMED_15273274}} | {{ABSTRACT_PUBMED_15273274}} | ||
==About this Structure== | ==About this Structure== | ||
| - | + | [[1skm]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Haemophilus_haemolyticus Haemophilus haemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SKM OCA]. | |
==Reference== | ==Reference== | ||
| - | <ref group="xtra">PMID: | + | <ref group="xtra">PMID:015273274</ref><references group="xtra"/> |
[[Category: Haemophilus haemolyticus]] | [[Category: Haemophilus haemolyticus]] | ||
[[Category: Banavali, N.]] | [[Category: Banavali, N.]] | ||
| Line 33: | Line 21: | ||
[[Category: Ratner, G.]] | [[Category: Ratner, G.]] | ||
[[Category: Protein-dna complex containing constrained abasic unnatural base]] | [[Category: Protein-dna complex containing constrained abasic unnatural base]] | ||
| - | + | [[Category: Transferase-dna complex]] | |
| - | + | ||
Revision as of 10:14, 4 January 2013
HhaI methyltransferase in complex with DNA containing an abasic south carbocyclic sugar at its target site
Template:ABSTRACT PUBMED 15273274
About this Structure
1skm is a 3 chain structure with sequence from Haemophilus haemolyticus. Full crystallographic information is available from OCA.
Reference
- Horton JR, Ratner G, Banavali NK, Huang N, Choi Y, Maier MA, Marquez VE, MacKerell AD Jr, Cheng X. Caught in the act: visualization of an intermediate in the DNA base-flipping pathway induced by HhaI methyltransferase. Nucleic Acids Res. 2004 Jul 23;32(13):3877-86. Print 2004. PMID:15273274 doi:10.1093/nar/gkh701
