This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
Template:STRUCTURE 1exn
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
{{Structure | {{Structure | ||
| - | |PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1exn]], resolution 2.50Å (<scene name='initialview01'>default scene</scene>)}}} | + | |PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1exn]], [[Resolution|resolution]] 2.50Å (<scene name='initialview01'>default scene</scene>)}}} |
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Exodeoxyribonuclease_(lambda-induced) Exodeoxyribonuclease (lambda-induced)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.11.3 3.1.11.3] </span> | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Exodeoxyribonuclease_(lambda-induced) Exodeoxyribonuclease (lambda-induced)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.11.3 3.1.11.3] </span> | ||
|GENE= D15 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10726 Enterobacteria phage T5]) | |GENE= D15 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10726 Enterobacteria phage T5]) | ||
| - | |DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00008 53EXOc], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=smart00475 53EXOc]</span> | ||
|NONSTDRES=<scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene> | |NONSTDRES=<scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene> | ||
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1exn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1exn OCA], [http://www.ebi.ac.uk/pdbsum/1exn PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1exn RCSB]</span> | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1exn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1exn OCA], [http://www.ebi.ac.uk/pdbsum/1exn PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1exn RCSB]</span> | ||
|FUNCTION={{GO|id=GO:0004518 | text = nuclease activity}}{{GO|id=GO:0003677 | text = DNA binding}}{{GO|id=GO:0004527 | text = exonuclease activity}}{{GO|id=GO:0016787 | text = hydrolase activity}}{{GO|id=GO:0008409 | text = 5'-3' exonuclease activity}} | |FUNCTION={{GO|id=GO:0004518 | text = nuclease activity}}{{GO|id=GO:0003677 | text = DNA binding}}{{GO|id=GO:0004527 | text = exonuclease activity}}{{GO|id=GO:0016787 | text = hydrolase activity}}{{GO|id=GO:0008409 | text = 5'-3' exonuclease activity}} | ||
|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1exnA01 1Exna01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1exnA02 1Exna02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1exnB01 1Exnb01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1exnB02 1Exnb02]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR008918 Ipr008918], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002421 Ipr002421]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF01367 PF01367]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=33358 d1exna2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=18088 d1exna1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=33359 d1exnb2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=18089 d1exnb1]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P06229 P06229]</span> | |SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1exnA01 1Exna01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1exnA02 1Exna02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1exnB01 1Exnb01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1exnB02 1Exnb02]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR008918 Ipr008918], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002421 Ipr002421]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF01367 PF01367]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=33358 d1exna2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=18088 d1exna1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=33359 d1exnb2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=18089 d1exnb1]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P06229 P06229]</span> | ||
| - | |CONSURF={{!}}- | + | |uPDB=1EXN|CONSURF={{!}}- |
{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]] | {{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]] | ||
{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" | {{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" | ||
Current revision
| |||||||||
| 1exn, resolution 2.50Å () | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Non-Standard Residues: | |||||||||
| Gene: | D15 (Enterobacteria phage T5) | ||||||||
| Activity: | Exodeoxyribonuclease (lambda-induced), with EC number 3.1.11.3 | ||||||||
| |||||||||
| |||||||||
| |||||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||||
