We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

Template:STRUCTURE 1y3g

From Proteopedia

(Difference between revisions)

Jump to: navigation, search

Revision as of 20:30, 26 December 2010

1y3g, resolution 2.10Å ()

Sites:

, , , , , , , , and

Ligands:

, , ,

Non-Standard Residues:

Activity:

Thermolysin, with EC number 3.4.24.27

Structural annotation:
Resources:	CATH : 1Y3Ge02, 1Y3Ge01 InterPro : Ipr013832, Ipr006025, Ipr013856, Ipr011096, Ipr001570, Ipr005075 Pfam : PF01447, PF02868 UniProt : P00800

Functional annotation:
Cellular component:	extracellular region
Biological process:	proteolysis
Molecular function:	hydrolase activity metalloendopeptidase activity metal ion binding zinc ion binding calcium ion binding metallopeptidase activity peptidase activity

Evolutionary conservation:

Toggle Conservation Colors:	Rows = identical sequences:
Further Information:	Caveats, Explanation, Complete Results at ConSurfDB

Resources:

FirstGlance, OCA, PDBsum, RCSB

Coordinates:

save as pdb, mmCIF, xml

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/Template:STRUCTURE_1y3g"

@@ Line 1: / Line 1: @@
 {{Structure
-|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1y3g]], resolution 2.10&Aring; (<scene name='initialview01'>default scene</scene>)}}}
+|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1y3g]], [[Resolution|resolution]] 2.10&Aring; (<scene name='initialview01'>default scene</scene>)}}}
+|SITE= <scene name='pdbsite=AC1:Binding+Site+For+Residue+Ca+E+317'>AC1</scene>, <scene name='pdbsite=AC2:Binding+Site+For+Residue+Ca+E+318'>AC2</scene>, <scene name='pdbsite=AC3:Binding+Site+For+Residue+Ca+E+319'>AC3</scene>, <scene name='pdbsite=AC4:Binding+Site+For+Residue+Ca+E+320'>AC4</scene>, <scene name='pdbsite=AC5:Binding+Site+For+Residue+Zn+E+321'>AC5</scene>, <scene name='pdbsite=AC6:Binding+Site+For+Residue+Dms+E+801'>AC6</scene>, <scene name='pdbsite=AC7:Binding+Site+For+Residue+Dms+E+802'>AC7</scene>, <scene name='pdbsite=AC8:Binding+Site+For+Residue+3pl+E+803'>AC8</scene>, <scene name='pdbsite=AC9:Binding+Site+For+Residue+Amm+E+804'>AC9</scene> and <scene name='pdbsite=BC1:Binding+Site+For+Residue+LEU+E+805'>BC1</scene>
 |LIGAND= <scene name='pdbligand=3PL:3-PHENYLPROPANAL'>3PL</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
 |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Thermolysin Thermolysin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.24.27 3.4.24.27] </span>
-|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam02868 Peptidase_M4_C], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam01447 Peptidase_M4]</span>
+|NONSTDRES=<scene name='pdbligand=AMM:'>AMM</scene>
-|NONSTDRES=<scene name='pdbligand=AMM:(2S)-2-{[(AMINOMETHYL)(DIHYDROXY)SILYL]METHYL}-4-METHYLPENTANAL'>AMM</scene>
 |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1y3g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y3g OCA], [http://www.ebi.ac.uk/pdbsum/1y3g PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1y3g RCSB]</span>
 |FUNCTION={{GO|id=GO:0016787 | text = hydrolase activity}}{{GO|id=GO:0004222 | text = metalloendopeptidase activity}}{{GO|id=GO:0046872 | text = metal ion binding}}{{GO|id=GO:0008270 | text = zinc ion binding}}{{GO|id=GO:0005509 | text = calcium ion binding}}{{GO|id=GO:0008237 | text = metallopeptidase activity}}{{GO|id=GO:0008233 | text = peptidase activity}}
@@ Line 10: / Line 10: @@
 |COMPONENT={{GO|id=GO:0005576 | text = extracellular region}}
 |SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1y3gE02 1Y3Ge02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1y3gE01 1Y3Ge01]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013832 Ipr013832], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006025 Ipr006025], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013856 Ipr013856], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR011096 Ipr011096], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001570 Ipr001570], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR005075 Ipr005075]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF01447 PF01447], [http://pfam.sanger.ac.uk/family?acc=PF02868 PF02868]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P00800 P00800]</span>
-|CONSURF={{!}}-
+|uPDB=1Y3G|CONSURF={{!}}-
 {{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
 {{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"

Template:STRUCTURE 1y3g

From Proteopedia

Revision as of 20:30, 26 December 2010

Proteopedia Page Contributors and Editors (what is this?)

Views

Personal tools

Navigation

Search

Toolbox