User:Jaime Prilusky/Sandbox BU
From Proteopedia
(Difference between revisions)
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Testing the '''Protein Assemblies''' generated by [http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html PISA]: Protein interfaces, surfaces and assemblies service PISA at European Bioinformatics Institute, authored by E. Krissinel and K. Henrick. | Testing the '''Protein Assemblies''' generated by [http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html PISA]: Protein interfaces, surfaces and assemblies service PISA at European Bioinformatics Institute, authored by E. Krissinel and K. Henrick. | ||
| - | In order to load and display a structure, the value for the ''load='' parameter determines what it will be shown. For some structures PISA calculates more than one possible Assembly. | + | In order to load and display a structure, the value for the ''load='' parameter determines what it will be shown. For some structures like [[1stp]], PISA calculates more than one possible Assembly. |
* <nowiki>load='2ace'</nowiki> displays the default PDB structure | * <nowiki>load='2ace'</nowiki> displays the default PDB structure | ||
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* <nowiki>load='2ace/n'</nowiki> displays the ''n'' Assembly calculated by PISA | * <nowiki>load='2ace/n'</nowiki> displays the ''n'' Assembly calculated by PISA | ||
| - | + | ||
<table><tr> | <table><tr> | ||
<td><applet load='2ace' size='200' frame='true' align='left' caption='2ace' /></td> | <td><applet load='2ace' size='200' frame='true' align='left' caption='2ace' /></td> | ||
<td><applet load='2ace/1' size='200' frame='true' align='right' caption='2ace/1' /></td> | <td><applet load='2ace/1' size='200' frame='true' align='right' caption='2ace/1' /></td> | ||
| + | </tr><tr> | ||
| + | <td><applet load='1stp' size='200' frame='true' align='left' caption='1stp' /></td> | ||
| + | <td><applet load='1stp/1' size='200' frame='true' align='right' caption='1stp/1' /></td> | ||
| + | <td><applet load='1stp/2' size='200' frame='true' align='right' caption='1stp/2' /></td> | ||
| + | <td><applet load='1stp/3' size='200' frame='true' align='right' caption='1stp/3' /></td> | ||
</tr><tr> | </tr><tr> | ||
<td><applet load='1zgc' size='200' frame='true' align='left' caption='1zgc' /></td> | <td><applet load='1zgc' size='200' frame='true' align='left' caption='1zgc' /></td> | ||
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<td><applet load='1y7w/1' size='200' frame='true' align='right' caption='1y7w/1' /></td> | <td><applet load='1y7w/1' size='200' frame='true' align='right' caption='1y7w/1' /></td> | ||
</tr></table> | </tr></table> | ||
| - | + | ||
| + | |||
<ref group='xtra'>PMID: 17681537</ref> | <ref group='xtra'>PMID: 17681537</ref> | ||
<references group='xtra'/> | <references group='xtra'/> | ||
Revision as of 10:26, 24 February 2009
Testing the Protein Assemblies generated by PISA: Protein interfaces, surfaces and assemblies service PISA at European Bioinformatics Institute, authored by E. Krissinel and K. Henrick.
In order to load and display a structure, the value for the load= parameter determines what it will be shown. For some structures like 1stp, PISA calculates more than one possible Assembly.
- load='2ace' displays the default PDB structure
- load='2ace/1' displays the first Assembly calculated by PISA
- load='2ace/n' displays the n Assembly calculated by PISA
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- Krissinel E, Henrick K. Inference of macromolecular assemblies from crystalline state. J Mol Biol. 2007 Sep 21;372(3):774-97. Epub 2007 May 13. PMID:17681537 doi:10.1016/j.jmb.2007.05.022
