Sandbox27

(Difference between revisions)

Revision as of 02:38, 4 March 2009

This sandbox is in use until June 1, 2009 for UMass Chemistry 490a. Others please do not edit this page. Thanks!

Chem 490A: Proteopedia Assignment

The shown in pink represent some of the hydrophobic elements throughout the crystallized structure of bacteriorhodopsin. Information from 1kme.

Ligands:

, ,

Structural annotation:
Resources:	CATH : 1Kmea00, 1Kmeb00 InterPro : Ipr001425 Pfam : PF01036 SCOP : d1kmea_, d1kmeb_ UniProt : P02945

Functional annotation:
Cellular component:	membrane integral to membrane
Biological process:	response to stimulus transport protein-chromophore linkage phototransduction ion transport proton transport
Molecular function:	hydrogen ion transmembrane transporter activity photoreceptor activity receptor activity ion channel activity

Evolutionary conservation:

Toggle Conservation Colors:	Rows = identical sequences:
Further Information:	Caveats, Explanation, Complete Results at ConSurfDB

Resources:

FirstGlance, OCA, PDBsum, RCSB

Coordinates:

save as pdb, mmCIF, xml

Crystal structure of bacteriorhodopsin crystallized from bicelles, Faham, S., Boweie, J.U.: 1kme

Drag the structure with the mouse to rotate

Contributors: Meenal Datta

@@ Line 4: / Line 4: @@
 Chem 490A: Proteopedia Assignment
-Meenal Datta
+The <scene name='Sandbox27/Alpha_helices/1'>alpha helices</scene> shown in pink represent some of the hydrophobic elements throughout the crystallized structure of bacteriorhodopsin.
 Information from [[1kme]].
@@ Line 11: / Line 10: @@
 <applet load='1kme' size='300' frame='true' align='right' caption='Crystal structure of bacteriorhodopsin crystallized from bicelles, Faham, S., Boweie, J.U.: 1kme' />
+Contributors:  Meenal Datta